Sandbox Reserved 1072

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== Structural Overview ==
== Structural Overview ==
===GGEEF Domain===
===GGEEF Domain===
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The <scene name='69/694239/Ggeef_domain_dgcz/2'>GGEEF</scene> Domain of Diguanylate Cyclase has the amino acid sequence GGEEF
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The <scene name='69/694239/Ggeef_domain_dgcz/2'>GGEEF</scene> Domain of Diguanylate Cyclase is the active site of the protein and has two amino acid sequences of GGEEF which allows for binding of two GTP molecules. The Active site can be divided up into two enzymatic <scene name='69/694239/Ggeef_domain_half_site_dgcz/1'>half-sites</scene>, each with a GGEEF domain for binding a single GTP molecule.
===Zinc Binding Domain===
===Zinc Binding Domain===
====3His/1Cys Motif====
====3His/1Cys Motif====
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== Zinc Ligand(s) ==
== Zinc Ligand(s) ==
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The two <scene name='69/694239/Zinc_binding_domain/1'>Zinc binding domains</scene> of Diguanylate Cyclase binds a single zinc ion each, for a total of two zinc ions.
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The two <scene name='69/694239/Zinc_binding_domain/1'>Zinc binding domains</scene> of Diguanylate Cyclase bind a single zinc ion each, for a total of two zinc ions.
== Other Ligands ==
== Other Ligands ==

Revision as of 00:37, 31 March 2017

This Sandbox is Reserved from 02/09/2015, through 05/31/2016 for use in the course "CH462: Biochemistry 2" taught by Geoffrey C. Hoops at the Butler University. This reservation includes Sandbox Reserved 1051 through Sandbox Reserved 1080.
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Diguanylate Cyclase DgcZ from Escherichia coli

Diguanylate Cyclase DgcZ

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References

  1. Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
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