1uyu
From Proteopedia
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|PDB= 1uyu |SIZE=350|CAPTION= <scene name='initialview01'>1uyu</scene>, resolution 2.00Å | |PDB= 1uyu |SIZE=350|CAPTION= <scene name='initialview01'>1uyu</scene>, resolution 2.00Å | ||
|SITE= <scene name='pdbsite=AC1:Xe+Binding+Site+For+Chain+B'>AC1</scene> | |SITE= <scene name='pdbsite=AC1:Xe+Binding+Site+For+Chain+B'>AC1</scene> | ||
| - | |LIGAND= <scene name='pdbligand= | + | |LIGAND= <scene name='pdbligand=CAM:CAMPHOR'>CAM</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=XE:XENON'>XE</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY= | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uyu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uyu OCA], [http://www.ebi.ac.uk/pdbsum/1uyu PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1uyu RCSB]</span> | ||
}} | }} | ||
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[[Category: Wade, R C.]] | [[Category: Wade, R C.]] | ||
[[Category: Winn, P J.]] | [[Category: Winn, P J.]] | ||
| - | [[Category: CAM]] | ||
| - | [[Category: HEM]] | ||
| - | [[Category: K]] | ||
| - | [[Category: XE]] | ||
[[Category: electron transport]] | [[Category: electron transport]] | ||
[[Category: heme]] | [[Category: heme]] | ||
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[[Category: oxidoreductase]] | [[Category: oxidoreductase]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:17:15 2008'' |
Revision as of 21:17, 30 March 2008
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| , resolution 2.00Å | |||||||
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| Sites: | |||||||
| Ligands: | , , , | ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
XENON COMPLEX OF WILDTYPE P450CAM FROM PSEUDOMONAS PUTIDA
Overview
In cytochrome P450s, the active site is situated deep inside the protein next to the heme cofactor, and is often completely isolated from the surrounding solvent. To identify routes by which substrates may enter into and products exit from the active site, random expulsion molecular dynamics simulations were performed for three cytochrome P450s: CYP101, CYP102A1 and CYP107A1 [J. Mol. Biol. 303 (2000) 797; Proc. Natl. Acad. Sci. USA 99 (2002) 5361]. Amongst the different pathways identified, one pathway was found to be common to all three cytochrome P450s although the mechanism of ligand passage along it was different in each case and apparently adapted to the substrate specificity of the enzyme. Recently, a number of new crystal structures of cytochrome P450s have been solved. Here, we analyse the open channels leading to the active site that these structures reveal. We find that in addition to showing the common pathway, they provide experimental evidence for the existence of three additional channels that were identified by simulation. We also discuss how the location of xenon binding sites in CYP101 suggests a role for one of the pathways identified by molecular dynamics simulations as a route for gaseous species, such as oxygen, to access the active site.
About this Structure
1UYU is a Single protein structure of sequence from Pseudomonas putida. Full crystallographic information is available from OCA.
Reference
A survey of active site access channels in cytochromes P450., Wade RC, Winn PJ, Schlichting I, Sudarko, J Inorg Biochem. 2004 Jul;98(7):1175-82. PMID:15219983
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