5mg2

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'''Unreleased structure'''
 
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The entry 5mg2 is ON HOLD until Paper Publication
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==Crystal structure of the second bromodomain of human TAF1 in complex with BAY-299 chemical probe==
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<StructureSection load='5mg2' size='340' side='right' caption='[[5mg2]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5mg2]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5MG2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5MG2 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=7M8:6-(3-OXIDANYLPROPYL)-2-(1,3,6-TRIMETHYL-2-OXIDANYLIDENE-BENZIMIDAZOL-5-YL)BENZO[DE]ISOQUINOLINE-1,3-DIONE'>7M8</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5mg2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5mg2 OCA], [http://pdbe.org/5mg2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5mg2 RCSB], [http://www.ebi.ac.uk/pdbsum/5mg2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5mg2 ProSAT]</span></td></tr>
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</table>
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== Disease ==
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[[http://www.uniprot.org/uniprot/TAF1_HUMAN TAF1_HUMAN]] Defects in TAF1 are the cause of dystonia type 3 (DYT3) [MIM:[http://omim.org/entry/314250 314250]]; also called X-linked dystonia-parkinsonism (XDP). DYT3 is a X-linked dystonia-parkinsonism disorder. Dystonia is defined by the presence of sustained involuntary muscle contractions, often leading to abnormal postures. DYT3 is characterized by severe progressive torsion dystonia followed by parkinsonism. Its prevalence is high in the Philippines. DYT3 has a well-defined pathology of extensive neuronal loss and mosaic gliosis in the striatum (caudate nucleus and putamen) which appears to resemble that in Huntington disease.<ref>PMID:12928496</ref> <ref>PMID:17273961</ref>
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== Function ==
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[[http://www.uniprot.org/uniprot/TAF1_HUMAN TAF1_HUMAN]] Largest component and core scaffold of the TFIID basal transcription factor complex. Contains novel N- and C-terminal Ser/Thr kinase domains which can autophosphorylate or transphosphorylate other transcription factors. Phosphorylates TP53 on 'Thr-55' which leads to MDM2-mediated degradation of TP53. Phosphorylates GTF2A1 and GTF2F1 on Ser residues. Possesses DNA-binding activity. Essential for progression of the G1 phase of the cell cycle.<ref>PMID:2038334</ref> <ref>PMID:8450888</ref> <ref>PMID:8625415</ref> <ref>PMID:9660973</ref> <ref>PMID:9858607</ref> <ref>PMID:11278496</ref> <ref>PMID:15053879</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Bromodomains (BD) are readers of lysine acetylation marks present in numerous proteins associated with chromatin. Here we describe a dual inhibitor of the bromodomain and PHD finger (BRPF) family member BRPF2 and the TATA box binding protein-associated factors TAF1 and TAF1L. These proteins are found in large chromatin complexes and play important roles in transcription regulation. The substituted benzoisoquinolinedione series was identified by high-throughput screening, and subsequent structure-activity relationship optimization allowed generation of low nanomolar BRPF2 BD inhibitors with strong selectivity against BRPF1 and BRPF3 BDs. In addition, a strong inhibition of TAF1/TAF1L BD2 was measured for most derivatives. The best compound of the series was BAY-299, which is a very potent, dual inhibitor with an IC50 of 67 nM for BRPF2 BD, 8 nM for TAF1 BD2, and 106 nM for TAF1L BD2. Importantly, no activity was measured for BRD4 BDs. Furthermore, cellular activity was evidenced using a BRPF2- or TAF1-histone H3.3 or H4 interaction assay.
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Authors: Tallant, C., Bouche, L., Holton, S.J., Fedorov, O., Siejka, P., Picaud, S., Krojer, T., Srikannathasan, V., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Hartung, I.V., Haendler, B., Muller, S., Huber, K.V.M., Structural Genomics Consortium (SGC)
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Benzoisoquinolinediones as Potent and Selective Inhibitors of BRPF2 and TAF1/TAF1L Bromodomains.,Bouche L, Christ CD, Siegel S, Fernandez-Montalvan AE, Holton SJ, Fedorov O, Ter Laak A, Sugawara T, Stockigt D, Tallant C, Bennett J, Monteiro O, Diaz-Saez L, Siejka P, Meier J, Putter V, Weiske J, Muller S, Huber KVM, Hartung IV, Haendler B J Med Chem. 2017 May 1. doi: 10.1021/acs.jmedchem.7b00306. PMID:28402630<ref>PMID:28402630</ref>
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Description: Crystal structure of the second bromodomain of human TAF1 in complex with BAY-299 chemical probe
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Holton, S.J]]
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<div class="pdbe-citations 5mg2" style="background-color:#fffaf0;"></div>
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[[Category: Arrowsmith, C.H]]
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== References ==
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[[Category: Fedorov, O]]
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<references/>
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[[Category: Von Delft, F]]
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__TOC__
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[[Category: Picaud, S]]
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</StructureSection>
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[[Category: Hartung, I.V]]
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[[Category: Arrowsmith, C H]]
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[[Category: Muller, S]]
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[[Category: Bouche, L]]
[[Category: Bouche, L]]
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[[Category: Siejka, P]]
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[[Category: Bountra, C]]
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[[Category: Edwards, A.M]]
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[[Category: Delft, F von]]
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[[Category: Structural Genomics Consortium (Sgc)]]
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[[Category: Edwards, A M]]
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[[Category: Huber, K.V.M]]
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[[Category: Fedorov, O]]
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[[Category: Tallant, C]]
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[[Category: Haendler, B]]
[[Category: Haendler, B]]
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[[Category: Hartung, I V]]
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[[Category: Holton, S J]]
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[[Category: Huber, K V.M]]
[[Category: Krojer, T]]
[[Category: Krojer, T]]
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[[Category: Muller, S]]
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[[Category: Picaud, S]]
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[[Category: Structural genomic]]
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[[Category: Siejka, P]]
[[Category: Srikannathasan, V]]
[[Category: Srikannathasan, V]]
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[[Category: Bountra, C]]
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[[Category: Tallant, C]]
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[[Category: Sgc]]
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[[Category: Transcription]]

Revision as of 13:02, 4 May 2017

Crystal structure of the second bromodomain of human TAF1 in complex with BAY-299 chemical probe

5mg2, resolution 1.75Å

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