5vcp
From Proteopedia
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| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of a peptide deformylase from Burkholderia xenovorans in complex with actinonin== | |
| - | + | <StructureSection load='5vcp' size='340' side='right' caption='[[5vcp]], [[Resolution|resolution]] 1.95Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[5vcp]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VCP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5VCP FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BB2:ACTINONIN'>BB2</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | |
| - | [[Category: | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr> |
| - | [[Category: | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5vcp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vcp OCA], [http://pdbe.org/5vcp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5vcp RCSB], [http://www.ebi.ac.uk/pdbsum/5vcp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5vcp ProSAT]</span></td></tr> |
| + | </table> | ||
| + | == Function == | ||
| + | [[http://www.uniprot.org/uniprot/Q13XB1_PARXL Q13XB1_PARXL]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163] | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Peptide deformylase]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Actinonin]] | ||
| + | [[Category: Burkholderia xenovoran]] | ||
| + | [[Category: Hydrolase-hydrolase inhibitor complex]] | ||
| + | [[Category: Ssgcid]] | ||
Revision as of 13:12, 4 May 2017
Crystal structure of a peptide deformylase from Burkholderia xenovorans in complex with actinonin
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