5u89

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'''Unreleased structure'''
 
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The entry 5u89 is ON HOLD until Paper Publication
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==Crystal structure of a cross-module fragment from the dimodular NRPS DhbF==
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<StructureSection load='5u89' size='340' side='right' caption='[[5u89]], [[Resolution|resolution]] 3.08&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5u89]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5U89 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5U89 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MJ8:5-({[(2R)-3-AMINO-2-{[2-({N-[(2R)-2-HYDROXY-3,3-DIMETHYL-4-(PHOSPHONOOXY)BUTANOYL]-BETA-ALANYL}AMINO)ETHYL]SULFANYL}PROPYL]SULFONYL}AMINO)-5-DEOXYADENOSINE'>MJ8</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5u89 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5u89 OCA], [http://pdbe.org/5u89 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5u89 RCSB], [http://www.ebi.ac.uk/pdbsum/5u89 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5u89 ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Nonribosomal peptide synthetases (NRPS) are macromolecular machines that produce peptides with diverse activities. Structural information exists for domains, didomains, and even modules, but little is known about higher-order organization. We performed a multi-technique study on constructs from the dimodular NRPS DhbF. We determined a crystal structure of a cross-module construct including the adenylation (A) and peptidyl carrier protein (PCP) domains from module 1 and the condensation domain from module 2, complexed with an adenosine-vinylsulfonamide inhibitor and an MbtH-like protein (MLP). The action of the inhibitor and the role of the MLP were investigated using adenylation reactions and isothermal titration calorimetry. In the structure, the PCP and A domains adopt a novel conformation, and noncovalent, cross-module interactions are limited. We calculated envelopes of dimodular DhbF using negative-stain electron microscopy. The data show large conformational variability between modules. Together, our results suggest that NRPSs lack a uniform, rigid supermodular architecture.
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Authors:
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X-Ray Crystallography and Electron Microscopy of Cross- and Multi-Module Nonribosomal Peptide Synthetase Proteins Reveal a Flexible Architecture.,Tarry MJ, Haque AS, Bui KH, Schmeing TM Structure. 2017 May 2;25(5):783-793.e4. doi: 10.1016/j.str.2017.03.014. Epub 2017, Apr 20. PMID:28434915<ref>PMID:28434915</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 5u89" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Schmeing, T M]]
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[[Category: Tarry, M J]]
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[[Category: Hydrolase-inhibitor complex]]
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[[Category: Mbth-like protein]]
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[[Category: Mechanism-based inhibitor]]
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[[Category: Megaenzyme]]
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[[Category: Nonribosomal peptide synthetase]]

Revision as of 12:51, 10 May 2017

Crystal structure of a cross-module fragment from the dimodular NRPS DhbF

5u89, resolution 3.08Å

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