5lkg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "5lkg" [edit=sysop:move=sysop])
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5lkg is ON HOLD
+
==Protruding domain of GII.17 norovirus Kawasaki308 in complex with 2-fucosyllactose (2'FL)==
 +
<StructureSection load='5lkg' size='340' side='right' caption='[[5lkg]], [[Resolution|resolution]] 1.51&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[5lkg]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LKG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LKG FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
 +
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5fmo|5fmo]], [[5hzb|5hzb]], [[5j35|5j35]]</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5lkg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lkg OCA], [http://pdbe.org/5lkg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lkg RCSB], [http://www.ebi.ac.uk/pdbsum/5lkg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lkg ProSAT]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Human noroviruses are the leading cause of outbreaks of acute gastroenteritis. Norovirus interactions with histo-blood group antigens (HBGAs) are known to be important for an infection. In this study, we identified the HBGA binding pocket for an emerging GII genotype 17 (GII.17) variant using X-ray crystallography. The GII.17 variant bound the HBGA with an equivalent set of residues as the leading pandemic GII.4 variants. These structural data highlights the conserved nature of HBGA binding site between prevalent GII noroviruses. Noroviruses also interact with human milk oligosaccharides (HMOs), which mimic HBGAs and may function as receptor decoys. We previously showed that HMOs inhibited the binding of rarely detected GII.10 norovirus to HBGAs. We now found that an HMO, 2'-fucosyllactose (2'FL), additionally blocked both the GI.1 and GII.17 noroviruses from binding to HBGAs. Together, these findings provide evidence that 2'FL might function as a broadly reactive antiviral against multiple norovirus genogroups.
-
Authors: Singh, B.K., Morozov, V., Hansman, G.S.
+
Human norovirus inhibition by a human milk oligosaccharide.,Koromyslova A, Tripathi S, Morozov V, Schroten H, Hansman GS Virology. 2017 May 12;508:81-89. doi: 10.1016/j.virol.2017.04.032. PMID:28505592<ref>PMID:28505592</ref>
-
Description: Protruding domain of GII.17 norovirus Kawasaki308 in complex with 2-fucosyllactose (2'FL)
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Hansman, G.S]]
+
<div class="pdbe-citations 5lkg" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Hansman, G S]]
[[Category: Morozov, V]]
[[Category: Morozov, V]]
-
[[Category: Singh, B.K]]
+
[[Category: Singh, B K]]
 +
[[Category: Hmo]]
 +
[[Category: Norovirus]]
 +
[[Category: P domain]]
 +
[[Category: Protruding domain]]
 +
[[Category: Viral protein]]
 +
[[Category: Virus capsid]]

Revision as of 13:40, 24 May 2017

Protruding domain of GII.17 norovirus Kawasaki308 in complex with 2-fucosyllactose (2'FL)

5lkg, resolution 1.51Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools