Mutation:TEST

This is a test page of a small structure (1crn) with dummy mutations to show the expected format for the data structures stored in the complementary Mutation:TEST_DATA page.

We describe the full sequence in the seq array, with the residue number as index, where the content is a two dimension array containing the residue and the PDB ID for the structure to display.

Mutations are declared in the mut array, with the residue number as index, where the content is a multidimensional array with a string for each variation, describing the residue and the mutation type.

var mut = [];
mut[10] = ['R Wild type','H Benign','Y Mild'];
mut[20] = ['G Wild type','A Benign'];
mut[30] = ['C Wild type','Y Pathogenic'];
mut[44] = ['C Wild type','E Mild','G Pathogenic'];

var seq = [];
seq[1] = ['T','1crn'];
seq[2] = ['T','1crn'];
seq[3] = ['C','1crn'];
seq[4] = ['C','1crn'];
seq[5] = ['P','1crn'];
seq[6] = ['S','1crn'];
seq[7] = ['I','1crn'];
seq[8] = ['V','1crn'];
seq[9] = ['A','1crn'];
seq[10] = ['R','1crn'];
seq[11] = ['S','1crn'];
seq[12] = ['N','1crn'];
seq[13] = ['F','1crn'];
seq[14] = ['N','1crn'];
seq[15] = ['V','1crn'];
seq[16] = ['C','1crn'];
seq[17] = ['R','1crn'];
seq[18] = ['L','1crn'];
seq[19] = ['P','1crn'];
seq[20] = ['G','1crn'];
seq[21] = ['T','1crn'];
seq[22] = ['P','1crn'];
seq[23] = ['E','1crn'];
seq[24] = ['A','1crn'];
seq[25] = ['I','1crn'];
seq[26] = ['C','1crn'];
seq[27] = ['A','1crn'];
seq[28] = ['T','1crn'];
seq[29] = ['Y','1crn'];
seq[30] = ['T','1crn'];
seq[31] = ['G','1crn'];
seq[32] = ['C','1crn'];
seq[33] = ['I','1crn'];
seq[34] = ['I','1crn'];
seq[35] = ['I','1crn'];
seq[36] = ['P','1crn'];
seq[37] = ['G','1crn'];
seq[38] = ['A','1crn'];
seq[39] = ['T','1crn'];
seq[40] = ['C','1crn'];
seq[41] = ['P','1crn'];
seq[42] = ['G','1crn'];
seq[43] = ['D','1crn'];
seq[44] = ['Y','1crn'];
seq[45] = ['A','1crn'];
seq[46] = ['N','1crn'];