Proteopedia:DIY:Templates

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m (fixing color addition)
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* See [[DRuMS#The DRuMS Color Schemes|DRuMS color template]].
* See [[DRuMS#The DRuMS Color Schemes|DRuMS color template]].
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<table width=280' align='right' cellpadding='0'><tr><td rowspan='2'>&nbsp;</td><td bgcolor='#eeeeee'><applet load='Image:Kt7.pdb.gz' size='280' frame='true' align='right' scene='User:Wayne_Decatur/kink-turn_motif/Ktcylinders/5' pspeed='8'/></td></tr><tr><td bgcolor='#eeeeee'><center>
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Proteopedia's ''Scene Authoring Tool'' implement much of the DRuMS color schemes, but not all.
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{{Button Toggle NucleicDrumsColorScheme}} {{ColorKey Bases RNA}}
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Several portions not implemented concern nucleotides. These are based on the following mnemonics for A, C, G, T, & U:
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</center></td></tr></table>
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<br><b><big>
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<font color="#5050ff">Azure</font>,
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<font color="#e00000">Crimson</font>,
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<font color="#00c000">Green</font>,
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<font color="#d0d000">Tweety Bird</font>,
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<font color="#cc9900">Umber</font>.</big></b>
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<blockquote><big>
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{{Template:ColorKey Purines}}, {{Template:ColorKey Pyrimidines}},
 +
<br>
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{{Template:ColorKey Bases Nucleotides}},
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<br>
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{{Template:ColorKey Bases DNA}},
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<br>
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{{Template:ColorKey Bases RNA}}.
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</big></blockquote>
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 +
The above colored terms were generated by including the following Template wikitext blocks:
 +
<pre>
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{{Template:ColorKey Purines}}
 +
{{Template:ColorKey Pyrimidines}}
 +
{{Template:ColorKey Bases Nucleotides}}
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{{Template:ColorKey Bases DNA}}
 +
{{Template:ColorKey Bases RNA}}
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</pre>
 +
<applet load='Image:Kt7.pdb.gz' size='150' frame='true' align='left' scene='User:Wayne_Decatur/kink-turn_motif/Kt7_halo/1' />A template exists for a related button that can be incorporated into Proteopedia pages and behaves similar to green scene link; when the button is pressed it results in coloring of the nucleotides according to the bases {{ColorKey Bases Nucleotides}}. Example:
 +
{{Button Toggle NucleicDrumsColorScheme}}
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<br>
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&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<scene name='User:Wayne_Decatur/kink-turn_motif/Kt7_halo/1'>Reset</scene>
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 +
 
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&nbsp;
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&nbsp;
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 +
 
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Similarly, for {{Template:ColorKey Purines}}/{{ColorKey Pyrimidines}}:<br>
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{{Button Toggle PurinePyrimidineDrumsColorScheme}}
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<br>
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&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<scene name='User:Wayne_Decatur/kink-turn_motif/Kt7_halo/1'>Reset</scene>
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 +
&nbsp;
{{Button Toggle NucleicDrumsColorScheme}}
{{Button Toggle NucleicDrumsColorScheme}}
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{{ColorKey Bases RNA}}
{{ColorKey Bases RNA}}
 +
{{ColorKey Bases DNA}}
{{ColorKey Bases DNA}}
 +
{{ColorKey Bases Nucleotides}}
{{ColorKey Bases Nucleotides}}
 +
{ColorKey Purines Pyrimidines}}
{ColorKey Purines Pyrimidines}}
 +
{{ColorKey Purines}}
{{ColorKey Purines}}
 +
{{ColorKey Pyrimidines}}
{{ColorKey Pyrimidines}}

Revision as of 15:42, 24 July 2017

Templates as a tool



Contents

Surface fade templates and buttons

Surface Fade Demo Display

Drag the structure with the mouse to rotate


Template Versions Ready to Use Anywhere Easily

(basic)

(with fancy cartoons)

As Buttons:

(basic)

(with fancy cartoons)



Surface Fade Code-in-Page Versions

While not templates, carry out similar functions as the `Surface Fade` templates and may be useful for further development or as examples of using Jmol coding in Proteopedia pages.

(basic)

(with fancy cartoons)


Label-handling templates

(No-demo made yet.)

Color Handling Templates

Proteopedia's Scene Authoring Tool implement much of the DRuMS color schemes, but not all. Several portions not implemented concern nucleotides. These are based on the following mnemonics for A, C, G, T, & U:
Azure, Crimson, Green, Tweety Bird, Umber.

Purines, Pyrimidines,
A C G T U,
A C G T,
A C G U.

The above colored terms were generated by including the following Template wikitext blocks: 

{{Template:ColorKey Purines}}
{{Template:ColorKey Pyrimidines}}
{{Template:ColorKey Bases Nucleotides}}
{{Template:ColorKey Bases DNA}}
{{Template:ColorKey Bases RNA}}
Drag the structure with the mouse to rotate
A template exists for a related button that can be incorporated into Proteopedia pages and behaves similar to green scene link; when the button is pressed it results in coloring of the nucleotides according to the bases A C G T U. Example:


           


   


Similarly, for Purines/Pyrimidines:

           

 

A C G U

A C G T

A C G T U

{ColorKey Purines Pyrimidines}}

Purines

Pyrimidines


See Also

Proteopedia Page Contributors and Editors (what is this?)

Wayne Decatur, Karsten Theis, Angel Herraez, Jaime Prilusky

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