1vrv
From Proteopedia
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|PDB= 1vrv |SIZE=350|CAPTION= <scene name='initialview01'>1vrv</scene> | |PDB= 1vrv |SIZE=350|CAPTION= <scene name='initialview01'>1vrv</scene> | ||
|SITE= | |SITE= | ||
| - | |LIGAND= | + | |LIGAND= <scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY= | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vrv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vrv OCA], [http://www.ebi.ac.uk/pdbsum/1vrv PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1vrv RCSB]</span> | ||
}} | }} | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1VRV is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/ | + | 1VRV is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_o157:h7 Escherichia coli o157:h7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VRV OCA]. |
==Reference== | ==Reference== | ||
Visualization of the phosphorylated active site loop of the cytoplasmic B domain of the mannitol transporter II(Mannitol) of the Escherichia coli phosphotransferase system by NMR spectroscopy and residual dipolar couplings., Suh JY, Tang C, Cai M, Clore GM, J Mol Biol. 2005 Nov 11;353(5):1129-36. Epub 2005 Sep 28. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16219324 16219324] | Visualization of the phosphorylated active site loop of the cytoplasmic B domain of the mannitol transporter II(Mannitol) of the Escherichia coli phosphotransferase system by NMR spectroscopy and residual dipolar couplings., Suh JY, Tang C, Cai M, Clore GM, J Mol Biol. 2005 Nov 11;353(5):1129-36. Epub 2005 Sep 28. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16219324 16219324] | ||
| - | [[Category: Escherichia coli | + | [[Category: Escherichia coli o157:h7]] |
[[Category: Single protein]] | [[Category: Single protein]] | ||
[[Category: Cai, M.]] | [[Category: Cai, M.]] | ||
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[[Category: transferase]] | [[Category: transferase]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:27:49 2008'' |
Revision as of 21:27, 30 March 2008
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| Ligands: | |||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Structure of phosphorylated IIB (C384(SEP)) domain of the mannitol-specific permease enzyme II
Overview
The solution structure of a stably phosphorylated form of the cytoplasmic B domain of the mannitol-specific transporter (IIB(Mtl)) of the Escherichia coli phosphotransferase system, containing a mutation of the active site Cys384 to Ser, has been solved by NMR. The strategy employed relies principally on backbone residual dipolar couplings recorded in three different alignment media, supplemented by nuclear Overhauser enhancement data and torsion angle restraints related specifically to the active site loop (residues 383-393). As judged from the dipolar coupling data, the remainder of the structure is unchanged upon phosphorylation within the errors of the coordinates of the previously determined solution structure of unphosphorylated wild-type IIB(Mtl). Thus, only the active site loop was refined. Phosphorylation results in a backbone atomic rms shift of approximately 0.7 angstroms in the active site loop. The resulting conformation is less than 0.5 angstroms away from the equivalent P-loop in both the low and high molecular mass eukaryotic tyrosine phosphatases. 3J(NP) coupling constant measurements using quantitative J-correlation spectroscopy provide a direct demonstration of a hydrogen bond between the phosphoryl group and the backbone amide of Ser391 at position i + 7 from phospho-Ser384, with an approximately linear P-O-H(N) bond angle. The structure also reveals additional hydrogen bonding interactions involving the backbone amides of residues at positions i + 4 and i + 5, and the hydroxyl groups of two serine residues at positions i + 6 and i + 7 that stabilize the phosphoryl group.
About this Structure
1VRV is a Single protein structure of sequence from Escherichia coli o157:h7. Full crystallographic information is available from OCA.
Reference
Visualization of the phosphorylated active site loop of the cytoplasmic B domain of the mannitol transporter II(Mannitol) of the Escherichia coli phosphotransferase system by NMR spectroscopy and residual dipolar couplings., Suh JY, Tang C, Cai M, Clore GM, J Mol Biol. 2005 Nov 11;353(5):1129-36. Epub 2005 Sep 28. PMID:16219324
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