1w1y
From Proteopedia
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|PDB= 1w1y |SIZE=350|CAPTION= <scene name='initialview01'>1w1y</scene>, resolution 1.85Å | |PDB= 1w1y |SIZE=350|CAPTION= <scene name='initialview01'>1w1y</scene>, resolution 1.85Å | ||
|SITE= <scene name='pdbsite=BC6:Typ+Binding+Site+For+Chain+B'>BC6</scene> | |SITE= <scene name='pdbsite=BC6:Typ+Binding+Site+For+Chain+B'>BC6</scene> | ||
| - | |LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TYP:CYCLO-(L-TYROSINE-L-PROLINE)+INHIBITOR'>TYP</scene> | + | |LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TYP:CYCLO-(L-TYROSINE-L-PROLINE)+INHIBITOR'>TYP</scene> |
| - | + | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Chitinase Chitinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.14 3.2.1.14] </span> | |
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY= | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1w1y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w1y OCA], [http://www.ebi.ac.uk/pdbsum/1w1y PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1w1y RCSB]</span> | ||
}} | }} | ||
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[[Category: Houston, D R.]] | [[Category: Houston, D R.]] | ||
[[Category: Synstad, B.]] | [[Category: Synstad, B.]] | ||
| - | [[Category: GOL]] | ||
| - | [[Category: SO4]] | ||
| - | [[Category: TYP]] | ||
[[Category: chitinase]] | [[Category: chitinase]] | ||
[[Category: cyclic dipeptide]] | [[Category: cyclic dipeptide]] | ||
| Line 36: | Line 36: | ||
[[Category: structure-based inhibitor design]] | [[Category: structure-based inhibitor design]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:30:05 2008'' |
Revision as of 21:30, 30 March 2008
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| , resolution 1.85Å | |||||||
|---|---|---|---|---|---|---|---|
| Sites: | |||||||
| Ligands: | , , | ||||||
| Activity: | Chitinase, with EC number 3.2.1.14 | ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
CRYSTAL STRUCTURE OF S. MARCESCENS CHITINASE B IN COMPLEX WITH THE CYCLIC DIPEPTIDE INHIBITOR CYCLO-(L-TYR-L-PRO) AT 1.85 A RESOLUTION
Overview
Family 18 chitinases play an essential role in a range of pathogens and pests. Several inhibitors are known, including the potent inhibitors argadin and allosamidin, and the structures of these in complex with chitinases have been elucidated. Recent structural analysis has revealed that CI-4 [cyclo-(L-Arg-D-Pro)] inhibits family 18 chitinases by mimicking the structure of the proposed reaction intermediate. Here we report the high-resolution structures of four new CI-4 derivatives, cyclo-(L-Arg-L-Pro), cyclo-(Gly-L-Pro), cyclo-(L-His-L-Pro), and cyclo-(L-Tyr-L-Pro), in complex with a family 18 chitinase. In addition, details of enzyme inhibition and in vivo activity against Saccharomyces cerevisiae are presented. The structures reveal that the common cyclo-(Gly-Pro) substructure is sufficient for binding, allowing modification of the side chain of the nonproline residue. This suggests that design of cyclic dipeptides with a view to increasing inhibition of family 18 chitinases should be possible through relatively accessible chemistry. The derivatives presented here in complex with chitinase B from Serratia marcescens provide further insight into the mechanism of inhibition of chitinases by cyclic dipeptides as well as providing a new scaffold for chitinase inhibitor design.
About this Structure
1W1Y is a Single protein structure of sequence from Serratia marcescens. Full crystallographic information is available from OCA.
Reference
Structure-based exploration of cyclic dipeptide chitinase inhibitors., Houston DR, Synstad B, Eijsink VG, Stark MJ, Eggleston IM, van Aalten DM, J Med Chem. 2004 Nov 4;47(23):5713-20. PMID:15509170
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