5wr5

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'''Unreleased structure'''
 
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The entry 5wr5 is ON HOLD until Paper Publication
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==Thermolysin, liganded form with cryo condition 1==
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<StructureSection load='5wr5' size='340' side='right' caption='[[5wr5]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5wr5]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WR5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5WR5 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NX6:N-[(BENZYLOXY)CARBONYL]-L-ASPARTIC+ACID'>NX6</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5wr6|5wr6]], [[5wr4|5wr4]], [[5wr3|5wr3]], [[5wr2|5wr2]]</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Thermolysin Thermolysin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.24.27 3.4.24.27] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5wr5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wr5 OCA], [http://pdbe.org/5wr5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5wr5 RCSB], [http://www.ebi.ac.uk/pdbsum/5wr5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5wr5 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[[http://www.uniprot.org/uniprot/THER_GEOSE THER_GEOSE]] Extracellular zinc metalloprotease.<ref>PMID:3149972</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Serial femtosecond crystallography (SFX) with an X-ray free-electron laser is used for the structural determination of proteins from a large number of microcrystals at room temperature. To examine the feasibility of pharmaceutical applications of SFX, a ligand-soaking experiment using thermolysin microcrystals has been performed using SFX. The results were compared with those from a conventional experiment with synchrotron radiation (SR) at 100 K. A protein-ligand complex structure was successfully obtained from an SFX experiment using microcrystals soaked with a small-molecule ligand; both oil-based and water-based crystal carriers gave essentially the same results. In a comparison of the SFX and SR structures, clear differences were observed in the unit-cell parameters, in the alternate conformation of side chains, in the degree of water coordination and in the ligand-binding mode.
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Authors: Kunishima, N., Naitow, H., Matsuura, Y.
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Protein-ligand complex structure from serial femtosecond crystallography using soaked thermolysin microcrystals and comparison with structures from synchrotron radiation.,Naitow H, Matsuura Y, Tono K, Joti Y, Kameshima T, Hatsui T, Yabashi M, Tanaka R, Tanaka T, Sugahara M, Kobayashi J, Nango E, Iwata S, Kunishima N Acta Crystallogr D Struct Biol. 2017 Aug 1;73(Pt 8):702-709. doi:, 10.1107/S2059798317008919. Epub 2017 Jul 31. PMID:28777085<ref>PMID:28777085</ref>
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Description: Thermolysin, liganded form with cryo condition 1
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Naitow, H]]
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<div class="pdbe-citations 5wr5" style="background-color:#fffaf0;"></div>
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[[Category: Matsuura, Y]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Thermolysin]]
[[Category: Kunishima, N]]
[[Category: Kunishima, N]]
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[[Category: Matsuura, Y]]
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[[Category: Naitow, H]]
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[[Category: Hydrolase]]
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[[Category: Microcrystal]]
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[[Category: Serial femtosecond crystallography]]
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[[Category: Structure-based drug design]]
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[[Category: X-ray free-electron laser]]

Revision as of 05:58, 17 August 2017

Thermolysin, liganded form with cryo condition 1

5wr5, resolution 1.90Å

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