5x67

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'''Unreleased structure'''
 
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The entry 5x67 is ON HOLD until Paper Publication
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==Human thymidylate synthase in complex with dUMP and nolatrexed==
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<StructureSection load='5x67' size='340' side='right' caption='[[5x67]], [[Resolution|resolution]] 2.13&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5x67]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X67 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5X67 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=7Z9:2-azanyl-6-methyl-5-pyridin-4-ylsulfanyl-3H-quinazolin-4-one'>7Z9</scene>, <scene name='pdbligand=UMP:2-DEOXYURIDINE+5-MONOPHOSPHATE'>UMP</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5x4w|5x4w]], [[5x4x|5x4x]], [[5x4y|5x4y]], [[5x5a|5x5a]], [[5x5d|5x5d]], [[5x5q|5x5q]], [[5x66|5x66]], [[5x69|5x69]]</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Thymidylate_synthase Thymidylate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.45 2.1.1.45] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5x67 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x67 OCA], [http://pdbe.org/5x67 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5x67 RCSB], [http://www.ebi.ac.uk/pdbsum/5x67 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5x67 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[[http://www.uniprot.org/uniprot/TYSY_HUMAN TYSY_HUMAN]] Contributes to the de novo mitochondrial thymidylate biosynthesis pathway.<ref>PMID:21876188</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Thymidylate synthase (TS) is the sole enzyme responsible for de novo biosynthesis of thymidylate (TMP) and is essential for cell proliferation and survival. Inhibition of human TS (hTS) has been extensively investigated for cancer chemotherapy, but several aspects of its activity and regulation are still uncertain. In this study, we performed comprehensive structural and biophysical studies of hTS using crystallography and thermal shift assay and provided the first detailed structural information on the conformational changes induced by ligand binding to the hTS active site. We found that upon binding of the antifolate agents raltitrexed and nolatrexed, the two insert regions in hTS, the functions of which are unclear, undergo positional shifts toward the catalytic center. We investigated the inactive conformation of hTS and found that the two insert regions are also involved in the conformational transition between the active and inactive state of hTS. Moreover, we identified a ligand-binding site in the dimer interface, suggesting that the cavity in the dimer interface could serve as an allosteric site of hTS to regulate the conformational switching between the active and inactive states. On the basis of these findings, we propose a regulatory mechanism of hTS activity that involves allosteric regulation of interactions of hTS with its own mRNA depending on cellular demands for TMP.
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Authors: Chen, D., Jansson, A., Larsson, A., Nordlund, P.
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Structural analyses of human thymidylate synthase reveal a site that may control conformational switching between active and inactive states.,Chen D, Jansson A, Sim D, Larsson A, Nordlund P J Biol Chem. 2017 Aug 11;292(32):13449-13458. doi: 10.1074/jbc.M117.787267. Epub , 2017 Jun 20. PMID:28634233<ref>PMID:28634233</ref>
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Description: Human thymidylate synthase in complex with dUMP and nolatrexed
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Nordlund, P]]
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<div class="pdbe-citations 5x67" style="background-color:#fffaf0;"></div>
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[[Category: Larsson, A]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Thymidylate synthase]]
[[Category: Chen, D]]
[[Category: Chen, D]]
[[Category: Jansson, A]]
[[Category: Jansson, A]]
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[[Category: Larsson, A]]
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[[Category: Nordlund, P]]
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[[Category: Methyltransferase]]
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[[Category: Transferase]]

Revision as of 04:11, 30 August 2017

Human thymidylate synthase in complex with dUMP and nolatrexed

5x67, resolution 2.13Å

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