5tch

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5tch is ON HOLD until Paper Publication
+
==Crystal structure of tryptophan synthase from M. tuberculosis - ligand-free form, TrpA-G66V mutant==
 +
<StructureSection load='5tch' size='340' side='right' caption='[[5tch]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[5tch]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TCH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5TCH FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene></td></tr>
 +
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene></td></tr>
 +
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5tcf|5tcf]], [[5tcg|5tcg]], [[5tci|5tci]], [[5tcj|5tcj]]</td></tr>
 +
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tryptophan_synthase Tryptophan synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.20 4.2.1.20] </span></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5tch FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tch OCA], [http://pdbe.org/5tch PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5tch RCSB], [http://www.ebi.ac.uk/pdbsum/5tch PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5tch ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[[http://www.uniprot.org/uniprot/TRPA_MYCTU TRPA_MYCTU]] The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. [[http://www.uniprot.org/uniprot/TRPB_MYCTU TRPB_MYCTU]] The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine (By similarity).
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
New antibiotics with novel targets are greatly needed. Bacteria have numerous essential functions, but only a small fraction of such processes-primarily those involved in macromolecular synthesis-are inhibited by current drugs. Targeting metabolic enzymes has been the focus of recent interest, but effective inhibitors have been difficult to identify. We describe a synthetic azetidine derivative, BRD4592, that kills Mycobacterium tuberculosis (Mtb) through allosteric inhibition of tryptophan synthase (TrpAB), a previously untargeted, highly allosterically regulated enzyme. BRD4592 binds at the TrpAB alpha-beta-subunit interface and affects multiple steps in the enzyme's overall reaction, resulting in inhibition not easily overcome by changes in metabolic environment. We show that TrpAB is required for the survival of Mtb and Mycobacterium marinum in vivo and that this requirement may be independent of an adaptive immune response. This work highlights the effectiveness of allosteric inhibition for targeting proteins that are naturally highly dynamic and that are essential in vivo, despite their apparent dispensability under in vitro conditions, and suggests a framework for the discovery of a next generation of allosteric inhibitors.
-
Authors: Michalska, K., Maltseva, N.I., Jedrzejczak, R., Wellington, S., Nag, P.P., Fisher, S.L., Schreiber, S.L., Hung, D.T., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
+
A small-molecule allosteric inhibitor of Mycobacterium tuberculosis tryptophan synthase.,Wellington S, Nag PP, Michalska K, Johnston SE, Jedrzejczak RP, Kaushik VK, Clatworthy AE, Siddiqi N, McCarren P, Bajrami B, Maltseva NI, Combs S, Fisher SL, Joachimiak A, Schreiber SL, Hung DT Nat Chem Biol. 2017 Sep;13(9):943-950. doi: 10.1038/nchembio.2420. Epub 2017 Jul , 3. PMID:28671682<ref>PMID:28671682</ref>
-
Description: Crystal structure of tryptophan synthase from M. tuberculosis -ligand-free form, TrpA-G66V mutant
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Michalska, K]]
+
<div class="pdbe-citations 5tch" style="background-color:#fffaf0;"></div>
-
[[Category: Fisher, S.L]]
+
== References ==
-
[[Category: Joachimiak, A]]
+
<references/>
-
[[Category: Maltseva, N.I]]
+
__TOC__
-
[[Category: Hung, D.T]]
+
</StructureSection>
 +
[[Category: Tryptophan synthase]]
 +
[[Category: Structural genomic]]
 +
[[Category: Fisher, S L]]
 +
[[Category: Hung, D T]]
[[Category: Jedrzejczak, R]]
[[Category: Jedrzejczak, R]]
-
[[Category: Schreiber, S.L]]
+
[[Category: Joachimiak, A]]
-
[[Category: Center For Structural Genomics Of Infectious Diseases (Csgid)]]
+
[[Category: Maltseva, N]]
-
[[Category: Nag, P.P]]
+
[[Category: Michalska, K]]
 +
[[Category: Nag, P P]]
 +
[[Category: Schreiber, S L]]
[[Category: Wellington, S]]
[[Category: Wellington, S]]
 +
[[Category: Allostery]]
 +
[[Category: Amino acid biosynthesis]]
 +
[[Category: Csgid]]
 +
[[Category: Heterotetramer]]
 +
[[Category: Lyase]]
 +
[[Category: Plp]]
 +
[[Category: Substrate channeling]]

Revision as of 04:12, 30 August 2017

Crystal structure of tryptophan synthase from M. tuberculosis - ligand-free form, TrpA-G66V mutant

5tch, resolution 2.35Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools