This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5j9k

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5j9k is ON HOLD until Oct 18 2018
+
==Crystal structure of the rice Topless related protein 2 (TPR2) N-terminal topless domain (1-209) in complex with rice D53 repressor EAR peptide motif==
 +
<StructureSection load='5j9k' size='340' side='right' caption='[[5j9k]], [[Resolution|resolution]] 2.55&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[5j9k]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5J9K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5J9K FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
 +
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5ja5|5ja5]], [[5jgc|5jgc]], [[5jhp|5jhp]]</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5j9k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5j9k OCA], [http://pdbe.org/5j9k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5j9k RCSB], [http://www.ebi.ac.uk/pdbsum/5j9k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5j9k ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[[http://www.uniprot.org/uniprot/TPR1_ORYSJ TPR1_ORYSJ]] Probable downstream regulator of strigolactones signaling.[UniProtKB:Q0J7U6]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
TOPLESS are tetrameric plant corepressors of the conserved Tup1/Groucho/TLE (transducin-like enhancer of split) family. We show that they interact through their TOPLESS domains (TPDs) with two functionally important ethylene response factor-associated amphiphilic repression (EAR) motifs of the rice strigolactone signaling repressor D53: the universally conserved EAR-3 and the monocot-specific EAR-2. We present the crystal structure of the monocot-specific EAR-2 peptide in complex with the TOPLESS-related protein 2 (TPR2) TPD, in which the EAR-2 motif binds the same TPD groove as jasmonate and auxin signaling repressors but makes additional contacts with a second TPD site to mediate TPD tetramer-tetramer interaction. We validated the functional relevance of the two TPD binding sites in reporter gene assays and in transgenic rice and demonstrate that EAR-2 binding induces TPD oligomerization. Moreover, we demonstrate that the TPD directly binds nucleosomes and the tails of histones H3 and H4. Higher-order assembly of TPD complexes induced by EAR-2 binding markedly stabilizes the nucleosome-TPD interaction. These results establish a new TPD-repressor binding mode that promotes TPD oligomerization and TPD-nucleosome interaction, thus illustrating the initial assembly of a repressor-corepressor-nucleosome complex.
-
Authors: Ke, J., Ma, H., Gu, X., Brunzelle, J.S., Xu, H.E., Melcher, K.
+
A D53 repression motif induces oligomerization of TOPLESS corepressors and promotes assembly of a corepressor-nucleosome complex.,Ma H, Duan J, Ke J, He Y, Gu X, Xu TH, Yu H, Wang Y, Brunzelle JS, Jiang Y, Rothbart SB, Xu HE, Li J, Melcher K Sci Adv. 2017 Jun 2;3(6):e1601217. doi: 10.1126/sciadv.1601217. eCollection 2017 , Jun. PMID:28630893<ref>PMID:28630893</ref>
-
Description: Crystal structure of the rice Topless related protein 2 (TPR2) N-terminal topless domain (1-209) in complex with rice D53 repressor EAR peptide motif
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Xu, H.E]]
+
<div class="pdbe-citations 5j9k" style="background-color:#fffaf0;"></div>
-
[[Category: Ma, H]]
+
== References ==
-
[[Category: Melcher, K]]
+
<references/>
-
[[Category: Brunzelle, J.S]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Brunzelle, J S]]
[[Category: Gu, X]]
[[Category: Gu, X]]
[[Category: Ke, J]]
[[Category: Ke, J]]
 +
[[Category: Ma, H]]
 +
[[Category: Melcher, K]]
 +
[[Category: Xu, H E]]
 +
[[Category: Alpha-helical structure]]
 +
[[Category: Tetramer]]
 +
[[Category: Transcription]]
 +
[[Category: Transcription repression]]
 +
[[Category: Transcriptional corepressor topless]]
 +
[[Category: Transcriptional repressor d53]]

Revision as of 10:03, 27 September 2017

Crystal structure of the rice Topless related protein 2 (TPR2) N-terminal topless domain (1-209) in complex with rice D53 repressor EAR peptide motif

5j9k, resolution 2.55Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools