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Riboswitch
From Proteopedia
(Difference between revisions)
| Line 31: | Line 31: | ||
**[[2xnz]] - BsGR aptamer domain + guanine derivative<br /> | **[[2xnz]] - BsGR aptamer domain + guanine derivative<br /> | ||
**[[2xo0]] - BsGR aptamer domain + triazine derivative<br /> | **[[2xo0]] - BsGR aptamer domain + triazine derivative<br /> | ||
| + | **[[5c7u]], [[5c7w]] - BsGR + hypoxanthine<br /> | ||
**[[2ees]], [[2eet]], [[2eeu]], [[2eev]], [[2eew]] - BsGR (mutant) + hypoxanthine<br /> | **[[2ees]], [[2eet]], [[2eeu]], [[2eev]], [[2eew]] - BsGR (mutant) + hypoxanthine<br /> | ||
**[[3gao]] - BsGR + xanthine<br /> | **[[3gao]] - BsGR + xanthine<br /> | ||
| Line 65: | Line 66: | ||
**[[4erj]] – TmKR + aminocaproic acid<br /> | **[[4erj]] – TmKR + aminocaproic acid<br /> | ||
**[[4erl]] – TmKR + Lys + Gly<br /> | **[[4erl]] – TmKR + Lys + Gly<br /> | ||
| + | |||
| + | *Glutamine riboswitch | ||
| + | |||
| + | **[[5ddp]] – QR + glutamine – human<br /> | ||
*FMN riboswitch | *FMN riboswitch | ||
| Line 71: | Line 76: | ||
**[[2yie]] - FnFMNR aptamer domain + FMN<br /> | **[[2yie]] - FnFMNR aptamer domain + FMN<br /> | ||
**[[3f4g]], [[3f4h]] – FnFMNR + flavin derivative<br /> | **[[3f4g]], [[3f4h]] – FnFMNR + flavin derivative<br /> | ||
| - | **[[2yif]] - FnFMNR + GTP | + | **[[2yif]] - FnFMNR + GTP<br /> |
| + | **[[5c45]] - FnFMNR + inhibitor<br /> | ||
*Pre-queosine riboswitch | *Pre-queosine riboswitch | ||
| Line 79: | Line 85: | ||
**[[3q50]], [[3q51]] – TtQ1R aptamer domain + queosine<br /> | **[[3q50]], [[3q51]] – TtQ1R aptamer domain + queosine<br /> | ||
**[[4jf2]] – Q1R + GTP + deaza-aminomethyl guanine – ''Lactobacillus rhamnosus''<br /> | **[[4jf2]] – Q1R + GTP + deaza-aminomethyl guanine – ''Lactobacillus rhamnosus''<br /> | ||
| + | **[[4rzd]] – Q1R + GTP + deaza-aminomethyl guanine – ''Faecalibacterium prausnitzii''<br /> | ||
*C-di-GMP riboswitch | *C-di-GMP riboswitch | ||
| Line 120: | Line 127: | ||
**[[4ena]] – TpR + Mg + Cs + GTP + F <br /> | **[[4ena]] – TpR + Mg + Cs + GTP + F <br /> | ||
**[[4enb]] – TpR + Mg + Ir + K + GTP + F <br /> | **[[4enb]] – TpR + Mg + Ir + K + GTP + F <br /> | ||
| + | **[[5kh8]] – R - synthetic - NMR<br /> | ||
*Cobalamine riboswitch | *Cobalamine riboswitch | ||
| Line 130: | Line 138: | ||
**[[4y1j]] – LlYYR (mutant) + Mn<br /> | **[[4y1j]] – LlYYR (mutant) + Mn<br /> | ||
**[[4y1m]] – EcYYR <br /> | **[[4y1m]] – EcYYR <br /> | ||
| + | |||
| + | *PFI riboswitch | ||
| + | |||
| + | **[[4znp]] – TpR + AICAR – synthetic<br /> | ||
| + | |||
| + | *ZMP riboswitch | ||
| + | |||
| + | **[[4xw7]], [[4xwf]] – TpR + AICAR – ''Actinomyces odontolyticus'' <br /> | ||
| + | |||
| + | *ZTP riboswitch | ||
| + | |||
| + | **[[5btp]] – TpR + AICAR – ''Fusobacterium ulcerans'' <br /> | ||
}} | }} | ||
Revision as of 23:06, 28 September 2017
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3D structures of riboswitch
Updated on 28-September-2017
References
- ↑ Breaker, Ronald R. (28 March, 2008). Complex Riboswitches. Science, 319(5871), 1795-1797. doi:10.1126/science.1152621
- ↑ Serganov A, Yuan YR, Pikovskaya O, Polonskaia A, Malinina L, Phan AT, Hobartner C, Micura R, Breaker RR, Patel DJ. Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem Biol. 2004 Dec;11(12):1729-41. PMID:15610857 doi:S1074-5521(04)00343-6
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