Riboswitch
From Proteopedia
(Difference between revisions)
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*Adenine riboswitch | *Adenine riboswitch | ||
| - | **[[1y26]], [[4tzx]], [[4tzy]], [[4xnr]] – | + | **[[1y26]], [[4tzx]], [[4tzy]], [[4xnr]], [[5swd]], [[5swe]] – VvAR + adenine – ''Vibrio vulnificus''<br /> |
| + | **[[5e54]] – VvAR <br /> | ||
**[[3ivn]] – BsAR (mutant) – ''Bacillus subtilis''<br /> | **[[3ivn]] – BsAR (mutant) – ''Bacillus subtilis''<br /> | ||
**[[3la5]] - BsAR (mutant) + azacytosine<br /> | **[[3la5]] - BsAR (mutant) + azacytosine<br /> | ||
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**[[3iqr]], [[2ydh]], [[2ygh]] - TtSAMR (mutant) + SAM<br /> | **[[3iqr]], [[2ydh]], [[2ygh]] - TtSAMR (mutant) + SAM<br /> | ||
**[[3iqp]] - TtSAMR<br /> | **[[3iqp]] - TtSAMR<br /> | ||
| + | **[[5fjc]], [[5fk1]], [[5fk2]], [[5fk3]], [[5fk4]], [[5fk5]], [[5fk6]], [[5fkd]], [[5fke]], [[5fkf]], [[5fkg]], [[5fkh]] - TtSAMR + SAM + GTP<br /> | ||
**[[2qwy]], [[3e5c]], [[3e5e]], [[3e5f]], [[3iqn]] - SAMR + SAM – synthetic<br /> | **[[2qwy]], [[3e5c]], [[3e5e]], [[3e5f]], [[3iqn]] - SAMR + SAM – synthetic<br /> | ||
**[[4kqy]] – BsSAMR + SAM<br /> | **[[4kqy]] – BsSAMR + SAM<br /> | ||
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**[[5ddp]] – QR + glutamine – human<br /> | **[[5ddp]] – QR + glutamine – human<br /> | ||
| + | **[[5ddq]], [[5ddr]] – SeQR + glutamine – ''Synechococcus elongatus''<br /> | ||
| + | **[[5ddo]] – SeQR + U1 small nuclear ribonucleoprotein<br /> | ||
*FMN riboswitch | *FMN riboswitch | ||
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**[[3f4g]], [[3f4h]] – FnFMNR + flavin derivative<br /> | **[[3f4g]], [[3f4h]] – FnFMNR + flavin derivative<br /> | ||
**[[2yif]] - FnFMNR + GTP<br /> | **[[2yif]] - FnFMNR + GTP<br /> | ||
| - | **[[5c45]] - FnFMNR + inhibitor<br /> | + | **[[5c45]], [[5kx9]] - FnFMNR + inhibitor<br /> |
*Pre-queosine riboswitch | *Pre-queosine riboswitch | ||
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**[[3gca]] – TtQ0R + queosine<br /> | **[[3gca]] – TtQ0R + queosine<br /> | ||
**[[3q50]], [[3q51]] – TtQ1R aptamer domain + queosine<br /> | **[[3q50]], [[3q51]] – TtQ1R aptamer domain + queosine<br /> | ||
| - | **[[4jf2]] – Q1R + GTP + deaza-aminomethyl guanine – ''Lactobacillus rhamnosus''<br /> | + | **[[4jf2]], [[5d5l]] – Q1R + GTP + deaza-aminomethyl guanine – ''Lactobacillus rhamnosus''<br /> |
**[[4rzd]] – Q1R + GTP + deaza-aminomethyl guanine – ''Faecalibacterium prausnitzii''<br /> | **[[4rzd]] – Q1R + GTP + deaza-aminomethyl guanine – ''Faecalibacterium prausnitzii''<br /> | ||
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**[[3irw]], [[3mxh]] – VcGMPR + C-di-GMP + GTP + U1 small nuclear ribonucleoprotein – ''Vibrio cholerae''<br /> | **[[3irw]], [[3mxh]] – VcGMPR + C-di-GMP + GTP + U1 small nuclear ribonucleoprotein – ''Vibrio cholerae''<br /> | ||
| - | **[[3iwn]] – VcGMPR + C-di-GMP + U1 small nuclear ribonucleoprotein<br /> | + | **[[3iwn]], [[4yb1]] – VcGMPR + C-di-GMP + U1 small nuclear ribonucleoprotein<br /> |
**[[3mum]], [[3mur]], [[3mut]] - VcGMPR (mutant) + C-di-GMP + U1 small nuclear ribonucleoprotein<br /> | **[[3mum]], [[3mur]], [[3mut]] - VcGMPR (mutant) + C-di-GMP + U1 small nuclear ribonucleoprotein<br /> | ||
**[[3muv]] - VcGMPR (mutant) + C-di-AMP + U1 small nuclear ribonucleoprotein<br /> | **[[3muv]] - VcGMPR (mutant) + C-di-AMP + U1 small nuclear ribonucleoprotein<br /> | ||
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**[[4qk8]], [[4qka]] – GMPR + GTP – ''Thermoanaerobacter pseudethanolicus''<br /> | **[[4qk8]], [[4qka]] – GMPR + GTP – ''Thermoanaerobacter pseudethanolicus''<br /> | ||
**[[4qk9]] – GMPR + guanosine derivative – ''Thermovirga lienii''<br /> | **[[4qk9]] – GMPR + guanosine derivative – ''Thermovirga lienii''<br /> | ||
| + | **[[4yaz]], [[4yb0]] – GMPR + C-di-GMP - ''Geobacter''<br /> | ||
| + | |||
| + | *C-di-AMP riboswitch | ||
| + | |||
| + | **[[4w90]], [[4w92]] – VBsAMPR + C-di-AMP + U1 small nuclear ribonucleoprotein<br /> | ||
*Glycine riboswitch | *Glycine riboswitch | ||
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**[[4y1j]] – LlYYR (mutant) + Mn<br /> | **[[4y1j]] – LlYYR (mutant) + Mn<br /> | ||
**[[4y1m]] – EcYYR <br /> | **[[4y1m]] – EcYYR <br /> | ||
| + | |||
| + | *ykkc riboswitch | ||
| + | |||
| + | **[[5u3g]] – TpR + gusanidine – ''Dikeya dadantii''<br /> | ||
*PFI riboswitch | *PFI riboswitch | ||
**[[4znp]] – TpR + AICAR – synthetic<br /> | **[[4znp]] – TpR + AICAR – synthetic<br /> | ||
| + | |||
| + | *NICO riboswitch | ||
| + | |||
| + | **[[4rum]] – TpR + Co – synthetic<br /> | ||
*ZMP riboswitch | *ZMP riboswitch | ||
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**[[5btp]] – TpR + AICAR – ''Fusobacterium ulcerans'' <br /> | **[[5btp]] – TpR + AICAR – ''Fusobacterium ulcerans'' <br /> | ||
| + | *Guanidine riboswitch | ||
| + | |||
| + | **[[5t83]] – TpR + guanidine – ''Sulfobacillus acidophilus'' <br /> | ||
| + | **[[5ndh]], [[5ndi]], [[5nef]], [[5neo]], [[5nep]], [[5neq]], [[5nex]], [[5nom]] – TpR + guanidine derivative – ''Gloeobacter violaceus'' <br /> | ||
| + | **[[5vj9]], [[5vjb]] – TpR + guanidine – ''Pseudomonas aeruginosa'' <br /> | ||
}} | }} | ||
== References == | == References == | ||
<references/> | <references/> | ||
[[Category: Topic Page]] | [[Category: Topic Page]] | ||
Revision as of 17:26, 29 September 2017
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3D structures of riboswitch
Updated on 29-September-2017
References
- ↑ Breaker, Ronald R. (28 March, 2008). Complex Riboswitches. Science, 319(5871), 1795-1797. doi:10.1126/science.1152621
- ↑ Serganov A, Yuan YR, Pikovskaya O, Polonskaia A, Malinina L, Phan AT, Hobartner C, Micura R, Breaker RR, Patel DJ. Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem Biol. 2004 Dec;11(12):1729-41. PMID:15610857 doi:S1074-5521(04)00343-6
Proteopedia Page Contributors and Editors (what is this?)
Michal Harel, Alexander Berchansky, Karsten Theis, Joel L. Sussman
