1y3b
From Proteopedia
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|PDB= 1y3b |SIZE=350|CAPTION= <scene name='initialview01'>1y3b</scene>, resolution 1.80Å | |PDB= 1y3b |SIZE=350|CAPTION= <scene name='initialview01'>1y3b</scene>, resolution 1.80Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand= | + | |LIGAND= <scene name='pdbligand=15P:POLYETHYLENE+GLYCOL+(N=34)'>15P</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene> |
| - | |ACTIVITY= [http://en.wikipedia.org/wiki/Subtilisin Subtilisin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.62 3.4.21.62] | + | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Subtilisin Subtilisin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.62 3.4.21.62] </span> |
|GENE= apr ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1390 Bacillus amyloliquefaciens]) | |GENE= apr ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1390 Bacillus amyloliquefaciens]) | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[1y1k|1Y1K]], [[1y33|1Y33]], [[1y34|1Y34]], [[1y3c|1Y3C]], [[1y3d|1Y3D]], [[1y3f|1Y3F]], [[1y48|1Y48]], [[1y4a|1Y4A]], [[1y4d|1Y4D]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y3b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y3b OCA], [http://www.ebi.ac.uk/pdbsum/1y3b PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1y3b RCSB]</span> | ||
}} | }} | ||
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[[Category: Lu, C J.]] | [[Category: Lu, C J.]] | ||
[[Category: Radisky, E S.]] | [[Category: Radisky, E S.]] | ||
| - | [[Category: | + | [[Category: inhibitor]] |
| - | + | [[Category: serine protease]] | |
| - | + | ||
| - | + | ||
| - | [[Category: serine protease | + | |
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:58:20 2008'' |
Revision as of 21:58, 30 March 2008
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| , resolution 1.80Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | , , , | ||||||
| Gene: | apr (Bacillus amyloliquefaciens) | ||||||
| Activity: | Subtilisin, with EC number 3.4.21.62 | ||||||
| Related: | 1Y1K, 1Y33, 1Y34, 1Y3C, 1Y3D, 1Y3F, 1Y48, 1Y4A, 1Y4D
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystal structure of the complex of subtilisin BPN' with chymotrypsin inhibitor 2 E60S mutant
Overview
A series of mutants of chymotrypsin inhibitor 2 (CI2), at residues involved in intramolecular interactions that shape and constrain the binding loop, were studied to determine their relative importance for inhibition of the serine protease subtilisin BPN', and for resistance of the inhibitor to proteolysis. These functional properties were investigated in tandem with the crystal structures of the mutant inhibitor-enzyme complexes. A dense hydrogen bonding network that supports the binding loop in the vicinity of the scissile bond was found to be important both for enzyme affinity and for stability to proteolysis. Structural analysis, in combination with biochemical measurements, allows differentiation of the structural components most important for resistance to proteolysis and/or binding. The most critical participating residues in the network were found to be Thr-58, Glu-60, Arg-65, and Gly-83. Glu-60 is more important for resistance to proteolysis than for binding, while Arg-65 and two other Arg residues play a greater role in binding than in resistance to proteolysis. Structural comparisons reveal a wide variety of subtle conformational changes in response to mutation, with built-in robustness in the hydrogen bond network, such that loss of one contact is compensated by other new contacts.
About this Structure
1Y3B is a Protein complex structure of sequences from Bacillus amyloliquefaciens and Hordeum vulgare. Full crystallographic information is available from OCA.
Reference
Role of the intramolecular hydrogen bond network in the inhibitory power of chymotrypsin inhibitor 2., Radisky ES, Lu CJ, Kwan G, Koshland DE Jr, Biochemistry. 2005 May 10;44(18):6823-30. PMID:15865427
Page seeded by OCA on Mon Mar 31 00:58:20 2008
