1ykg
From Proteopedia
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|PDB= 1ykg |SIZE=350|CAPTION= <scene name='initialview01'>1ykg</scene> | |PDB= 1ykg |SIZE=350|CAPTION= <scene name='initialview01'>1ykg</scene> | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand=FMN:FLAVIN MONONUCLEOTIDE'>FMN</scene> | + | |LIGAND= <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene> |
| - | |ACTIVITY= [http://en.wikipedia.org/wiki/Sulfite_reductase_(NADPH) Sulfite reductase (NADPH)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.1.2 1.8.1.2] | + | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Sulfite_reductase_(NADPH) Sulfite reductase (NADPH)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.1.2 1.8.1.2] </span> |
|GENE= cysJ ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]) | |GENE= cysJ ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]) | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY= | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ykg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ykg OCA], [http://www.ebi.ac.uk/pdbsum/1ykg PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1ykg RCSB]</span> | ||
}} | }} | ||
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[[Category: Coves, J.]] | [[Category: Coves, J.]] | ||
[[Category: Sibille, N.]] | [[Category: Sibille, N.]] | ||
| - | [[Category: FMN]] | ||
[[Category: electron transport]] | [[Category: electron transport]] | ||
[[Category: flavoprotein]] | [[Category: flavoprotein]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:10:47 2008'' |
Revision as of 22:10, 30 March 2008
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| Ligands: | |||||||
| Gene: | cysJ (Escherichia coli) | ||||||
| Activity: | Sulfite reductase (NADPH), with EC number 1.8.1.2 | ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Solution structure of the flavodoxin-like domain from the Escherichia coli sulfite reductase
Overview
The flavoprotein moiety of Escherichia coli sulfite reductase (SiR-FP) is homologous to electron transfer proteins such as cytochrome-P450 reductase (CPR) or nitric oxide synthase (NOS). We report on the three-dimensional structure of SiR-FP18, the flavodoxin-like domain of SiR-FP, which has been determined by NMR. In the holoenzyme, this domain plays an important role by shuttling electrons from the FAD to the hemoprotein (the beta-subunit). The structure presented here was determined using distance and torsion angle information in combination with residual dipolar couplings determined in two different alignment media. Several protein-FMN NOEs allowed us to place the prosthetic group in its binding pocket. The structure is well-resolved, and (15)N relaxation data indicate that SiR-FP18 is a compact domain. The binding interface with cytochrome c, a nonphysiological electron acceptor, has been determined using chemical shift mapping. Comparison of the SiR-FP18 structure with the corresponding domains from CPR and NOS shows that the fold of the protein core is highly conserved, but the analysis of the electrostatic surfaces reveals significant differences between the three domains. These observations are placed in the physiological context so they can contribute to the understanding of the electron transfer mechanism in the SiR holoenzyme.
About this Structure
1YKG is a Single protein structure of sequence from Escherichia coli. Full crystallographic information is available from OCA.
Reference
Solution structure of the sulfite reductase flavodoxin-like domain from Escherichia coli., Sibille N, Blackledge M, Brutscher B, Coves J, Bersch B, Biochemistry. 2005 Jun 28;44(25):9086-95. PMID:15966732
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