1yoe
From Proteopedia
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|PDB= 1yoe |SIZE=350|CAPTION= <scene name='initialview01'>1yoe</scene>, resolution 1.78Å | |PDB= 1yoe |SIZE=350|CAPTION= <scene name='initialview01'>1yoe</scene>, resolution 1.78Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand= | + | |LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=RIB:RIBOSE'>RIB</scene> |
| - | |ACTIVITY= [http://en.wikipedia.org/wiki/Ribosylpyrimidine_nucleosidase Ribosylpyrimidine nucleosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.8 3.2.2.8] | + | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribosylpyrimidine_nucleosidase Ribosylpyrimidine nucleosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.8 3.2.2.8] </span> |
|GENE= ybeK/rihA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]) | |GENE= ybeK/rihA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]) | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[1mas|1MAS]], [[2mas|2MAS]], [[1ezr|1EZR]], [[1q8f|1Q8F]], [[1hoz|1HOZ]], [[1kie|1KIE]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yoe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yoe OCA], [http://www.ebi.ac.uk/pdbsum/1yoe PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1yoe RCSB]</span> | ||
}} | }} | ||
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[[Category: Steyaert, J.]] | [[Category: Steyaert, J.]] | ||
[[Category: Versees, W.]] | [[Category: Versees, W.]] | ||
| - | [[Category: CA]] | ||
| - | [[Category: RIB]] | ||
[[Category: bacterial nucleosidase]] | [[Category: bacterial nucleosidase]] | ||
[[Category: enzyme/product complex]] | [[Category: enzyme/product complex]] | ||
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[[Category: ribose]] | [[Category: ribose]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:15:36 2008'' |
Revision as of 22:15, 30 March 2008
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| , resolution 1.78Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | , | ||||||
| Gene: | ybeK/rihA (Escherichia coli) | ||||||
| Activity: | Ribosylpyrimidine nucleosidase, with EC number 3.2.2.8 | ||||||
| Related: | 1MAS, 2MAS, 1EZR, 1Q8F, 1HOZ, 1KIE
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystal structure of a the E. coli pyrimidine nucleoside hydrolase YbeK with bound ribose
Overview
Enzymes with nucleoside hydrolase (NH) activity are crucial for salvaging nucleic acid components in purine auxotrophic protozoan parasites, but are also present in prokaryotes and higher eukaryotes. Here we analyze the distribution of genes encoding for putative NH proteins and characterize the yeiK gene product from Escherichia coli as a pyrimidine-specific NH. The crystal structure of YeiK to 1.7 A defines the structural basis for its substrate specificity and identifies residues involved in the catalytic mechanism that differ from both nonspecific and purine-specific NHs. Large differences in the tetrameric quaternary structure compared to nonspecific protozoan NHs are brought forth by minor differences in the interacting surfaces. The first structural and functional characterization of a nonparasitic, pyrimidine nucleoside-specific NH suggests a possible role for these enzymes in the metabolism of tRNA nucleosides. The high catalytic efficiency of YeiK toward 5-fluorouridine could be exploited for suicide gene therapy in cancer treatment.
About this Structure
1YOE is a Single protein structure of sequence from Escherichia coli. Full crystallographic information is available from OCA.
Reference
Crystal structure to 1.7 a of the Escherichia coli pyrimidine nucleoside hydrolase YeiK, a novel candidate for cancer gene therapy., Giabbai B, Degano M, Structure. 2004 May;12(5):739-49. PMID:15130467
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