5y79

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m (Protected "5y79" [edit=sysop:move=sysop])
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'''Unreleased structure'''
 
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The entry 5y79 is ON HOLD until Paper Publication
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==Crystal structure of the triose-phosphate/phosphate translocator in complex with 3-phosphoglycerate==
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<StructureSection load='5y79' size='340' side='right' caption='[[5y79]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5y79]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y79 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5Y79 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=3PG:3-PHOSPHOGLYCERIC+ACID'>3PG</scene>, <scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5y79 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y79 OCA], [http://pdbe.org/5y79 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5y79 RCSB], [http://www.ebi.ac.uk/pdbsum/5y79 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5y79 ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The triose-phosphate/phosphate translocator (TPT) catalyses the strict 1:1 exchange of triose-phosphate, 3-phosphoglycerate and inorganic phosphate across the chloroplast envelope, and plays crucial roles in photosynthesis. Despite rigorous study for more than 40 years, the molecular mechanism of TPT is poorly understood because of the lack of structural information. Here we report crystal structures of TPT bound to two different substrates, 3-phosphoglycerate and inorganic phosphate, in occluded conformations. The structures reveal that TPT adopts a 10-transmembrane drug/metabolite transporter fold. Both substrates are bound within the same central pocket, where conserved lysine, arginine and tyrosine residues recognize the shared phosphate group. A structural comparison with the outward-open conformation of the bacterial drug/metabolite transporter suggests a rocker-switch motion of helix bundles, and molecular dynamics simulations support a model in which this rocker-switch motion is tightly coupled to the substrate binding, to ensure strict 1:1 exchange. These results reveal the unique mechanism of sugar phosphate/phosphate exchange by TPT.The first crystal structures of TPT, a membrane transporter that exports the Calvin cycle intermediates from chloroplasts and plays fundamental roles in nearly all photosynthetic eukaryotes, have now been resolved in complex with different substrates.
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Authors: Lee, Y., Nishizawa, T., Takemoto, M., Kumazaki, K., Yamashita, K., Hirata, K., Minoda, A., Nagatoishi, S., Tsumoto, K., Ishitani, R., Nureki, O.
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Structure of the triose-phosphate/phosphate translocator reveals the basis of substrate specificity.,Lee Y, Nishizawa T, Takemoto M, Kumazaki K, Yamashita K, Hirata K, Minoda A, Nagatoishi S, Tsumoto K, Ishitani R, Nureki O Nat Plants. 2017 Oct 2. doi: 10.1038/s41477-017-0022-8. PMID:28970497<ref>PMID:28970497</ref>
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Description: Crystal structure of the triose-phosphate/phosphate translocator in complex with 3-phosphoglycerate
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Nureki, O]]
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<div class="pdbe-citations 5y79" style="background-color:#fffaf0;"></div>
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[[Category: Yamashita, K]]
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== References ==
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[[Category: Nishizawa, T]]
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<references/>
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__TOC__
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</StructureSection>
[[Category: Hirata, K]]
[[Category: Hirata, K]]
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[[Category: Nagatoishi, S]]
 
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[[Category: Tsumoto, K]]
 
[[Category: Ishitani, R]]
[[Category: Ishitani, R]]
[[Category: Kumazaki, K]]
[[Category: Kumazaki, K]]
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[[Category: Lee, Y]]
[[Category: Minoda, A]]
[[Category: Minoda, A]]
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[[Category: Nagatoishi, S]]
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[[Category: Nishizawa, T]]
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[[Category: Nureki, O]]
[[Category: Takemoto, M]]
[[Category: Takemoto, M]]
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[[Category: Lee, Y]]
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[[Category: Tsumoto, K]]
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[[Category: Yamashita, K]]
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[[Category: Antiporter]]
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[[Category: Chloroplast]]
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[[Category: Inner envelop membrane]]
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[[Category: Sugar phosphate]]
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[[Category: Transport protein]]

Revision as of 07:01, 18 October 2017

Crystal structure of the triose-phosphate/phosphate translocator in complex with 3-phosphoglycerate

5y79, resolution 2.20Å

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