5ox6

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m (Protected "5ox6" [edit=sysop:move=sysop])
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'''Unreleased structure'''
 
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The entry 5ox6 is ON HOLD until Paper Publication
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==HIF prolyl hydroxylase 2 (PHD2/ EGLN1) in complex with Vadadustat==
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<StructureSection load='5ox6' size='340' side='right' caption='[[5ox6]], [[Resolution|resolution]] 1.99&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5ox6]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OX6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5OX6 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=A1Z:Vadadustat'>A1Z</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Hypoxia-inducible_factor-proline_dioxygenase Hypoxia-inducible factor-proline dioxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.14.11.29 1.14.11.29] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ox6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ox6 OCA], [http://pdbe.org/5ox6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ox6 RCSB], [http://www.ebi.ac.uk/pdbsum/5ox6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ox6 ProSAT]</span></td></tr>
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</table>
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== Disease ==
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[[http://www.uniprot.org/uniprot/EGLN1_HUMAN EGLN1_HUMAN]] Defects in EGLN1 are the cause of familial erythrocytosis type 3 (ECYT3) [MIM:[http://omim.org/entry/609820 609820]]. ECYT3 is an autosomal dominant disorder characterized by increased serum red blood cell mass, elevated serum hemoglobin and hematocrit, and normal serum erythropoietin levels.<ref>PMID:16407130</ref> <ref>PMID:17579185</ref>
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== Function ==
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[[http://www.uniprot.org/uniprot/EGLN1_HUMAN EGLN1_HUMAN]] Cellular oxygen sensor that catalyzes, under normoxic conditions, the post-translational formation of 4-hydroxyproline in hypoxia-inducible factor (HIF) alpha proteins. Hydroxylates a specific proline found in each of the oxygen-dependent degradation (ODD) domains (N-terminal, NODD, and C-terminal, CODD) of HIF1A. Also hydroxylates HIF2A. Has a preference for the CODD site for both HIF1A and HIF1B. Hydroxylated HIFs are then targeted for proteasomal degradation via the von Hippel-Lindau ubiquitination complex. Under hypoxic conditions, the hydroxylation reaction is attenuated allowing HIFs to escape degradation resulting in their translocation to the nucleus, heterodimerization with HIF1B, and increased expression of hypoxy-inducible genes. EGLN1 is the most important isozyme under normoxia and, through regulating the stability of HIF1, involved in various hypoxia-influenced processes such as angiogenesis in retinal and cardiac functionality.<ref>PMID:11595184</ref> <ref>PMID:12351678</ref> <ref>PMID:15897452</ref> <ref>PMID:19339211</ref> <ref>PMID:21792862</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The hypoxia inducible factor (HIF) system is central to the signaling of low oxygen (hypoxia) in animals. The levels of HIF-alpha isoforms are regulated in an oxygen-dependent manner by the activity of the HIF prolyl-hydroxylases (PHD or EGLN enzymes), which are Fe(II) and 2-oxoglutarate (2OG) dependent oxygenases. Here, we describe biochemical, crystallographic and cellular profiling studies on PHD inhibitors including selectivity studies using a representative set of human 2OG oxygenases. We identify suitable probe compounds for use in studies on the functional effects of PHD inhibition in cells and in animals.
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Authors: Chowdhury, R., Schofield, C.J.
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Selective Small Molecule Probes for the Hypoxia Inducible Factor (HIF) Prolyl Hydroxylases.,Chowdhury R, Candela-Lena JI, Chan MC, Greenald DJ, Yeoh KK, Tian YM, McDonough MA, Tumber A, Rose NR, Conejo-Garcia A, Demetriades M, Mathavan S, Kawamura A, Lee MK, van Eeden F, Pugh CW, Ratcliffe PJ, Schofield CJ ACS Chem Biol. 2013 May 17. PMID:23683440<ref>PMID:23683440</ref>
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Description: HIF prolyl hydroxylase 2 (PHD2/ EGLN1) in complex with Vadadustat
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 5ox6" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Hypoxia-inducible factor-proline dioxygenase]]
[[Category: Chowdhury, R]]
[[Category: Chowdhury, R]]
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[[Category: Schofield, C.J]]
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[[Category: Schofield, C J]]
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[[Category: Zhang, D]]
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[[Category: 2-oxoglutarate]]
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[[Category: Beta-hydroxylation]]
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[[Category: Breast cancer]]
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[[Category: Cell structure]]
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[[Category: Cytoplasm]]
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[[Category: Development]]
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[[Category: Dna-binding]]
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[[Category: Dsbh]]
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[[Category: Egln1]]
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[[Category: Facial triad]]
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[[Category: Familial erythrocytosis]]
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[[Category: Helix-loop-helix-beta]]
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[[Category: Hif]]
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[[Category: Hif prolyl hydroxylase domain 2]]
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[[Category: Hypoxia]]
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[[Category: Hypoxia-inducible factor]]
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[[Category: Iron]]
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[[Category: Metal-binding]]
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[[Category: Non-heme dioxygenase]]
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[[Category: Oxidoreductase]]
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[[Category: Oxygenase]]
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[[Category: Phd2]]
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[[Category: Polymorphism]]
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[[Category: Signaling]]
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[[Category: Transcription]]
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[[Category: Transcription activator/inhibitor]]
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[[Category: Transcription complex]]
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[[Category: Transcription/epigenetic regulation]]
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[[Category: Ubl conjugation]]
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[[Category: Vitamin c]]
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[[Category: Zinc-finger]]

Revision as of 07:13, 18 October 2017

HIF prolyl hydroxylase 2 (PHD2/ EGLN1) in complex with Vadadustat

5ox6, resolution 1.99Å

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