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2ioy

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Revision as of 08:33, 18 October 2017

Crystal structure of Thermoanaerobacter tengcongensis ribose binding protein

Structural highlights

2ioy is a 2 chain structure with sequence from As 1.2430. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
Gene:	tte0206 (AS 1.2430)
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

BACKGROUND: Comparison of experimentally determined mesophilic and thermophilic homologous protein structures is an important tool for understanding the mechanisms that contribute to thermal stability. Of particular interest are pairs of homologous structures that are structurally very similar, but differ significantly in thermal stability. RESULTS: We report the X-ray crystal structure of a Thermoanaerobacter tengcongensis ribose binding protein (tteRBP) determined to 1.9 A resolution. We find that tteRBP is significantly more stable (appTm value approximately 102 degrees C) than the mesophilic Escherichia coli ribose binding protein (ecRBP) (appTm value ~56 degrees C). The tteRBP has essentially the identical backbone conformation (0.41 A RMSD of 235/271 Calpha positions and 0.65 A RMSD of 270/271 Calpha positions) as ecRBP. Classification of the amino acid substitutions as a function of structure therefore allows the identification of amino acids which potentially contribute to the observed thermal stability of tteRBP in the absence of large structural heterogeneities. CONCLUSION: The near identity of backbone structures of this pair of proteins entails that the significant differences in their thermal stabilities are encoded exclusively by the identity of the amino acid side-chains. Furthermore, the degree of sequence divergence is strongly correlated with structure; with a high degree of conservation in the core progressing to increased diversity in the boundary and surface regions. Different factors that may possibly contribute to thermal stability appear to be differentially encoded in each of these regions of the protein. The tteRBP/ecRBP pair therefore offers an opportunity to dissect contributions to thermal stability by side-chains alone in the absence of large structural differences.

The backbone structure of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein is essentially identical to its mesophilic E. coli homolog.,Cuneo MJ, Tian Y, Allert M, Hellinga HW BMC Struct Biol. 2008 Mar 28;8:20. PMID:18373848^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Cuneo MJ, Tian Y, Allert M, Hellinga HW. The backbone structure of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein is essentially identical to its mesophilic E. coli homolog. BMC Struct Biol. 2008 Mar 28;8:20. PMID:18373848 doi:10.1186/1472-6807-8-20

1 Structural highlights
2 Evolutionary Conservation
3 Publication Abstract from PubMed
4 See Also
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2ioy"

@@ Line 1: / Line 1: @@
 ==Crystal structure of Thermoanaerobacter tengcongensis ribose binding protein==
 <StructureSection load='2ioy' size='340' side='right' caption='[[2ioy]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
@@ Line 5: / Line 6: @@
 </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=RIP:RIBOSE(PYRANOSE+FORM)'>RIP</scene></td></tr>
 <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">tte0206 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=119072 AS 1.2430])</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ioy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ioy OCA], [http://pdbe.org/2ioy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ioy RCSB], [http://www.ebi.ac.uk/pdbsum/2ioy PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ioy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ioy OCA], [http://pdbe.org/2ioy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ioy RCSB], [http://www.ebi.ac.uk/pdbsum/2ioy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ioy ProSAT]</span></td></tr>
 </table>
 == Evolutionary Conservation ==
@@ Line 29: / Line 30: @@
 ==See Also==
 *[[Journal:JBSD:22|Journal:JBSD:22]]
-*[[Ribose-binding protein|Ribose-binding protein]]
 == References ==
 <references/>

2ioy

From Proteopedia

Revision as of 08:33, 18 October 2017

Crystal structure of Thermoanaerobacter tengcongensis ribose binding protein

Structural highlights

Evolutionary Conservation

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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