User:Teresa Maria Carusone/Sandbox 1
From Proteopedia
(Difference between revisions)
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== '''Overview''' == | == '''Overview''' == | ||
- | '''Phosphotriesterase-Like Lactonase (PLL)''' family includes a group of enzymes that have main lactonase activity on lactones and acyl-homoserin lactones (AHLs) and, in addition, low promiscuous phosphotriesterase activity towards organophosphates compound (OPs). At the beginning most of them has been identified as putative phosphotriesterases and were called "Paraoxonases" (Pox) because able to degrade pesticides such as paraoxon <ref name="rasmol"><ref>PMID: 15909078</ref><ref name="rasmol2"> <ref>PMID:17337320</ref>. However, further structural, phylogenetic, and biochemical studies have revealed that these enzymes have a proficient lactonase activity, beside the weak phosphotriesterase activity | + | '''Phosphotriesterase-Like Lactonase (PLL)''' family includes a group of enzymes that have main lactonase activity on lactones and acyl-homoserin lactones (AHLs) and, in addition, low promiscuous phosphotriesterase activity towards organophosphates compound (OPs). At the beginning most of them has been identified as putative phosphotriesterases and were called "Paraoxonases" (Pox) because able to degrade pesticides such as paraoxon <ref name="rasmol"><ref>PMID: 15909078</ref><ref name="rasmol2"> <ref>PMID:17337320</ref>. However, further structural, phylogenetic, and biochemical studies have revealed that these enzymes have a proficient lactonase activity, beside the weak phosphotriesterase activity <ref>PMID:17105187</ref>. |
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== '''SsoPox''' == | == '''SsoPox''' == | ||
Sso Pox is a protein of 314 aa deriving from the hyperthermophilic archaeon ''Sulfolobus solfataricus'' and it is the first protein with phosphotriesterase activities to be identified in Archaea. It has an exceptional thermal stability with denaturation half-life of 4h and 90 min at 95 °C and 100 °C <ref name="rasmol" /><ref name="rasmol2" />. | Sso Pox is a protein of 314 aa deriving from the hyperthermophilic archaeon ''Sulfolobus solfataricus'' and it is the first protein with phosphotriesterase activities to be identified in Archaea. It has an exceptional thermal stability with denaturation half-life of 4h and 90 min at 95 °C and 100 °C <ref name="rasmol" /><ref name="rasmol2" />. | ||
- | Its activity depends on the presence of metal ions, with cobalt significantly enhancing catalysis. SsoPox have been reported to catalyse the hydrolysis of different N-acyl homoserine lactones AHLs; suggesting a physiological role as a quorum quencher lactonase. Infact the AHLs are natural molecules involved in the cell–cell communication process known as quorum sensing (QS) and any bacterial species may produce different AHLs, which vary in the length and substitution of the acyl chain. The anti-QS mechanisms of the enzyme works by the hydrolysis of the lactone bond of these AHLs | + | Its activity depends on the presence of metal ions, with cobalt significantly enhancing catalysis. SsoPox have been reported to catalyse the hydrolysis of different N-acyl homoserine lactones AHLs; suggesting a physiological role as a quorum quencher lactonase. Infact the AHLs are natural molecules involved in the cell–cell communication process known as quorum sensing (QS) and any bacterial species may produce different AHLs, which vary in the length and substitution of the acyl chain. The anti-QS mechanisms of the enzyme works by the hydrolysis of the lactone bond of these AHLs. |
- | == '''Structural highlights''' | + | == '''Structural highlights''' <ref>PMID:18486146</ref>== |
SsoPox is homodimeric, and the monomer is roughly globular. The SsoPox structure could be described as a distorted <scene name='77/770586/Alfa_beta_8_barrel/2'>(α/β)-8 barrel </scene>. The SsoPox active site consists of a cavity containing a <scene name='77/770586/Bi-nuclear_center/2'>bi-nuclear center</scene>, located at the C terminus of the β -barrel. These two metal cations are bridged by a putative catalytic <scene name='77/770586/Bi-nuclear_center/4'>water molecule</scene>, and by <scene name='77/770586/Lis_137_ok/2'>carboxylated lysine</scene> . As for the metal cation coordination, <scene name='77/770586/4_histidine/3'>four histidine residues </scene> are also involved, as well as <scene name='77/770586/Asp_256/1'>an aspartic acid (Asp256)</scene> and a <scene name='77/770586/Bi-nuclear_center/5'>second watermolecule</scene>. | SsoPox is homodimeric, and the monomer is roughly globular. The SsoPox structure could be described as a distorted <scene name='77/770586/Alfa_beta_8_barrel/2'>(α/β)-8 barrel </scene>. The SsoPox active site consists of a cavity containing a <scene name='77/770586/Bi-nuclear_center/2'>bi-nuclear center</scene>, located at the C terminus of the β -barrel. These two metal cations are bridged by a putative catalytic <scene name='77/770586/Bi-nuclear_center/4'>water molecule</scene>, and by <scene name='77/770586/Lis_137_ok/2'>carboxylated lysine</scene> . As for the metal cation coordination, <scene name='77/770586/4_histidine/3'>four histidine residues </scene> are also involved, as well as <scene name='77/770586/Asp_256/1'>an aspartic acid (Asp256)</scene> and a <scene name='77/770586/Bi-nuclear_center/5'>second watermolecule</scene>. | ||
The most deeply buried metal cation (called α) adopts a trigonal bipyramidal geometry, being bound by coordination bonds with <scene name='77/770586/Alfa_coordination/3'>with His22, His24, Asp256, Lys137 and the bridging water molecule</scene>. The most solvent exposed (called β ) has a distorted trigonal bipyramidal geometry, and is bound to <scene name='77/770586/Cation_beta/4'>His170, His199, Lys137, the bridging water molecule</scene> and the second water molecule. | The most deeply buried metal cation (called α) adopts a trigonal bipyramidal geometry, being bound by coordination bonds with <scene name='77/770586/Alfa_coordination/3'>with His22, His24, Asp256, Lys137 and the bridging water molecule</scene>. The most solvent exposed (called β ) has a distorted trigonal bipyramidal geometry, and is bound to <scene name='77/770586/Cation_beta/4'>His170, His199, Lys137, the bridging water molecule</scene> and the second water molecule. |
Revision as of 15:45, 24 October 2017
Phosphotriesterase-Like Lactonase (PLL)
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References
- ↑ 1.0 1.1 <ref>PMID: 15909078</li> <li id="cite_note-rasmol2-1">↑ <sup>[[#cite_ref-rasmol2_1-0|2.0]]</sup> <sup>[[#cite_ref-rasmol2_1-1|2.1]]</sup> <ref>PMID:17337320</li> <li id="cite_note-2">[[#cite_ref-2|↑]] Afriat L, Roodveldt C, Manco G, Tawfik DS. The latent promiscuity of newly identified microbial lactonases is linked to a recently diverged phosphotriesterase. Biochemistry. 2006 Nov 21;45(46):13677-86. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17105187 17105187] doi:[http://dx.doi.org/10.1021/bi061268r http://dx.doi.org/10.1021/bi061268r]</li> <li id="cite_note-3">[[#cite_ref-3|↑]] Elias M, Dupuy J, Merone L, Mandrich L, Porzio E, Moniot S, Rochu D, Lecomte C, Rossi M, Masson P, Manco G, Chabriere E. Structural basis for natural lactonase and promiscuous phosphotriesterase activities. J Mol Biol. 2008 Jun 20;379(5):1017-28. Epub 2008 Apr 16. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18486146 18486146] doi:[http://dx.doi.org/10.1016/j.jmb.2008.04.022 10.1016/j.jmb.2008.04.022]</li> <li id="cite_note-rasmol5-4">[[#cite_ref-rasmol5_4-0|↑]] <ref>PMID:16171387</li> <li id="cite_note-5">[[#cite_ref-5|↑]] Singh BK. Organophosphorus-degrading bacteria: ecology and industrial applications. Nat Rev Microbiol. 2009 Feb;7(2):156-64. doi: 10.1038/nrmicro2050. Epub 2008 Dec , 22. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/19098922 19098922] doi:[http://dx.doi.org/10.1038/nrmicro2050 http://dx.doi.org/10.1038/nrmicro2050]</li></ol></ref>