5ng1
From Proteopedia
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- | '''Unreleased structure''' | ||
- | + | ==TUBULIN-MTC-zampanolide complex== | |
+ | <StructureSection load='5ng1' size='340' side='right' caption='[[5ng1]], [[Resolution|resolution]] 2.20Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[5ng1]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/ ] and [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NG1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5NG1 FirstGlance]. <br> | ||
+ | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8WB:2-methoxy-5-(2,3,4-trimethoxyphenyl)cyclohepta-2,4,6-trien-1-one'>8WB</scene>, <scene name='pdbligand=8WE:(2~{Z},4~{E})-~{N}-[(~{S})-oxidanyl-[(1~{S},2~{E},5~{S},11~{R},17~{S},19~{R})-3,11,19-trimethyl-7,13-bis(oxidanylidene)-6,21-dioxabicyclo[15.3.1]henicos-2-en-5-yl]methyl]hexa-2,4-dienamide'>8WE</scene>, <scene name='pdbligand=ACP:PHOSPHOMETHYLPHOSPHONIC+ACID+ADENYLATE+ESTER'>ACP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZPN:(2Z,4E)-N-[(S)-[(1S,2E,5S,8E,10Z,17S)-3,11-DIMETHYL-19-METHYLIDENE-7,13-DIOXO-6,21-DIOXABICYCLO[15.3.1]HENICOSA-2,8,10-TRIEN-5-YL](HYDROXY)METHYL]HEXA-2,4-DIENAMIDE'>ZPN</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ng1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ng1 OCA], [http://pdbe.org/5ng1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ng1 RCSB], [http://www.ebi.ac.uk/pdbsum/5ng1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ng1 ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [[http://www.uniprot.org/uniprot/TBA1B_BOVIN TBA1B_BOVIN]] Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. [[http://www.uniprot.org/uniprot/STMN4_RAT STMN4_RAT]] Exhibits microtubule-destabilizing activity.<ref>PMID:15039434</ref> <ref>PMID:12111843</ref> <ref>PMID:15014504</ref> [[http://www.uniprot.org/uniprot/TBB2B_BOVIN TBB2B_BOVIN]] Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (By similarity). | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | The marine natural product zampanolide and analogues thereof constitute a new chemotype of taxoid site microtubule-stabilizing agents with a covalent mechanism of action. Zampanolide-ligated tubulin has the switch-activation loop (M-loop) in the assembly prone form and, thus, represents an assembly activated state of the protein. In this study, we have characterized the biochemical properties of the covalently modified, activated tubulin dimer, and we have determined the effect of zampanolide on tubulin association and the binding of tubulin ligands at other binding sites. Tubulin activation by zampanolide does not affect its longitudinal oligomerization but does alter its lateral association properties. The covalent binding of zampanolide to beta-tubulin affects both the colchicine site, causing a change of the quantum yield of the bound ligand, and the exchangeable nucleotide binding site, reducing the affinity for the nucleotide. While these global effects do not change the binding affinity of 2-methoxy-5-(2,3,4-trimethoxyphenyl)-2,4,6-cycloheptatrien-1-one (MTC) (a reversible binder of the colchicine site), the binding affinity of a fluorescent analogue of GTP (Mant-GTP) at the nucleotide E-site is reduced from 12 +/- 2 x 105 M-1 in the case of unmodified tubulin to 1.4 +/- 0.3 x 105 M-1 in the case of the zampanolide tubulin adduct, indicating signal transmission between the taxane site and the colchicine and nucleotide sites of beta-tubulin. | ||
- | + | Zampanolide Binding to Tubulin Indicates Cross-Talk of Taxane Site with Colchicine and Nucleotide Sites.,Field JJ, Pera B, Gallego JE, Calvo E, Rodriguez-Salarichs J, Saez-Calvo G, Zuwerra D, Jordi M, Andreu JM, Prota AE, Menchon G, Miller JH, Altmann KH, Diaz JF J Nat Prod. 2017 Oct 12. doi: 10.1021/acs.jnatprod.7b00704. PMID:29023132<ref>PMID:29023132</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
- | [[Category: Altmann, K | + | <div class="pdbe-citations 5ng1" style="background-color:#fffaf0;"></div> |
- | [[Category: | + | == References == |
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Bos taurus]] | ||
+ | [[Category: Altmann, K H]] | ||
+ | [[Category: Calvo, E]] | ||
+ | [[Category: Diaz, J F]] | ||
+ | [[Category: Field, J J]] | ||
+ | [[Category: Gallego, J Estevez]] | ||
[[Category: Jordi, M]] | [[Category: Jordi, M]] | ||
- | [[Category: Field, J.J]] | ||
- | [[Category: Prota, A.E]] | ||
- | [[Category: Miller, J.H]] | ||
- | [[Category: Estevez Gallego, J]] | ||
[[Category: Menchon, G]] | [[Category: Menchon, G]] | ||
- | [[Category: | + | [[Category: Miller, J H]] |
[[Category: Pera, B]] | [[Category: Pera, B]] | ||
- | [[Category: | + | [[Category: Prota, A E]] |
[[Category: Rodriguez-Salarichs, J]] | [[Category: Rodriguez-Salarichs, J]] | ||
[[Category: Saez-Calvo, G]] | [[Category: Saez-Calvo, G]] | ||
+ | [[Category: Zuwerra, D]] | ||
+ | [[Category: Cell cycle]] | ||
+ | [[Category: Cytoskeleton]] | ||
+ | [[Category: Microtubule]] | ||
+ | [[Category: Tubulin fold]] |
Revision as of 06:55, 25 October 2017
TUBULIN-MTC-zampanolide complex
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