1zbn
From Proteopedia
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|PDB= 1zbn |SIZE=350|CAPTION= <scene name='initialview01'>1zbn</scene> | |PDB= 1zbn |SIZE=350|CAPTION= <scene name='initialview01'>1zbn</scene> | ||
|SITE= | |SITE= | ||
| - | |LIGAND= | + | |LIGAND= <scene name='pdbligand=A:ADENOSINE-5'-MONOPHOSPHATE'>A</scene>, <scene name='pdbligand=C:CYTIDINE-5'-MONOPHOSPHATE'>C</scene>, <scene name='pdbligand=G:GUANOSINE-5'-MONOPHOSPHATE'>G</scene>, <scene name='pdbligand=U:URIDINE-5'-MONOPHOSPHATE'>U</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[1biv|1BIV]], [[1mnb|1MNB]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zbn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zbn OCA], [http://www.ebi.ac.uk/pdbsum/1zbn PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1zbn RCSB]</span> | ||
}} | }} | ||
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[[Category: rna-peptide complex]] | [[Category: rna-peptide complex]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:33:41 2008'' |
Revision as of 22:33, 30 March 2008
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| Ligands: | , , , | ||||||
| Related: | 1BIV, 1MNB
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| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Solution structure of BIV TAR hairpin complexed to JDV Tat arginine-rich motif
Overview
An arginine-rich peptide from the Jembrana disease virus (JDV) Tat protein is a structural "chameleon" that binds bovine immunodeficiency virus (BIV) or HIV TAR RNAs in two different binding modes, with an affinity for BIV TAR even higher than the cognate BIV peptide. We determined the NMR structure of the JDV Tat-BIV TAR high-affinity complex and found that the C-terminal tyrosine in JDV Tat forms a network of inter- and intramolecular hydrogen bonding and stacking interactions that simultaneously stabilize the beta-hairpin conformation of the peptide and a base triple in the RNA. A neighboring histidine also appears to help stabilize the peptide conformation. Induced fit binding is recurrent in protein-protein and protein-nucleic acid interactions, and the JDV Tat complex demonstrates how high affinity can be achieved not only by optimization of the binding interface but also by inducing new intramolecular contacts that stabilize each binding partner. Comparison to the cognate BIV Tat peptide-TAR complex shows how such a costabilization mechanism can evolve with only small changes to the peptide sequence. In addition, the bound structure of BIV TAR in the chameleon peptide complex is strikingly similar to the bound conformation of HIV TAR, suggesting new strategies for the development of HIV TAR binding molecules.
About this Structure
1ZBN is a Protein complex structure of sequences from [1]. Full crystallographic information is available from OCA.
Reference
A single intermolecular contact mediates intramolecular stabilization of both RNA and protein., Calabro V, Daugherty MD, Frankel AD, Proc Natl Acad Sci U S A. 2005 May 10;102(19):6849-54. Epub 2005 Apr 27. PMID:15857951
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