5w3v
From Proteopedia
(Difference between revisions)
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<StructureSection load='5w3v' size='340' side='right' caption='[[5w3v]], [[Resolution|resolution]] 2.24Å' scene=''> | <StructureSection load='5w3v' size='340' side='right' caption='[[5w3v]], [[Resolution|resolution]] 2.24Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5w3v]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5W3V OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5W3V FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5w3v]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Macne Macne]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5W3V OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5W3V FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene></td></tr> | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5w3v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5w3v OCA], [http://pdbe.org/5w3v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5w3v RCSB], [http://www.ebi.ac.uk/pdbsum/5w3v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5w3v ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5w3v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5w3v OCA], [http://pdbe.org/5w3v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5w3v RCSB], [http://www.ebi.ac.uk/pdbsum/5w3v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5w3v ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The APOBEC3 family of cytidine deaminases cause lethal hypermutation of retroviruses via deamination of newly reverse-transcribed viral DNA. Their ability to bind RNA is essential for virion infiltration and antiviral activity, yet the mechanisms of viral RNA recognition are unknown. By screening naturally occurring, polymorphic, non-human primate APOBEC3H variants for biological and crystallization properties, we obtained a 2.24-A crystal structure of pig-tailed macaque APOBEC3H with bound RNA. Here, we report that APOBEC3H forms a dimer around a short RNA duplex and, despite the bound RNA, has potent cytidine deaminase activity. The structure reveals an unusual RNA-binding mode in which two APOBEC3H molecules at opposite ends of a seven-base-pair duplex interact extensively with both RNA strands, but form no protein-protein contacts. CLIP-seq analysis revealed that APOBEC3H preferentially binds to sequences in the viral genome predicted to contain duplexes, a property that may facilitate both virion incorporation and catalytic activity. | ||
| + | |||
| + | APOBEC3H structure reveals an unusual mechanism of interaction with duplex RNA.,Bohn JA, Thummar K, York A, Raymond A, Brown WC, Bieniasz PD, Hatziioannou T, Smith JL Nat Commun. 2017 Oct 18;8(1):1021. doi: 10.1038/s41467-017-01309-6. PMID:29044109<ref>PMID:29044109</ref> | ||
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| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 5w3v" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Macne]] | ||
[[Category: Bieniasz, P D]] | [[Category: Bieniasz, P D]] | ||
[[Category: Bohn, J A]] | [[Category: Bohn, J A]] | ||
Revision as of 06:20, 1 November 2017
Crystal Structure of macaque APOBEC3H in complex with RNA
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