5nqa

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'''Unreleased structure'''
 
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The entry 5nqa is ON HOLD until Paper Publication
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==Crystal structure of GalNAc-T4 in complex with the monoglycopeptide 3==
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<StructureSection load='5nqa' size='340' side='right' caption='[[5nqa]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5nqa]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NQA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5NQA FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NGA:N-ACETYL-D-GALACTOSAMINE'>NGA</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Polypeptide_N-acetylgalactosaminyltransferase Polypeptide N-acetylgalactosaminyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.41 2.4.1.41] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5nqa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nqa OCA], [http://pdbe.org/5nqa PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5nqa RCSB], [http://www.ebi.ac.uk/pdbsum/5nqa PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5nqa ProSAT]</span></td></tr>
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</table>
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== Function ==
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[[http://www.uniprot.org/uniprot/GALT4_HUMAN GALT4_HUMAN]] Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a highest activity toward Muc7, EA2 and Muc2, with a lowest activity than GALNT2. Glycosylates 'Thr-57' of SELPLG.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The polypeptide GalNAc-transferases (GalNAc-Ts), that initiate mucin-type O-glycosylation, consist of a catalytic and a lectin domain connected by a flexible linker. In addition to recognizing polypeptide sequence, the GalNAc-Ts exhibit unique long-range N- and/or C-terminal prior glycosylation (GalNAc-O-Ser/Thr) preferences modulated by the lectin domain. Here we report studies on GalNAc-T4 that reveal the origins of its unique N-terminal long-range glycopeptide specificity, which is the opposite of GalNAc-T2. The GalNAc-T4 structure bound to a monoglycopeptide shows that the GalNAc-binding site of its lectin domain is rotated relative to the homologous GalNAc-T2 structure, explaining their different long-range preferences. Kinetics and molecular dynamics simulations on several GalNAc-T2 flexible linker constructs show altered remote prior glycosylation preferences, confirming that the flexible linker dictates the rotation of the lectin domain, thus modulating the GalNAc-Ts' long-range preferences. This work for the first time provides the structural basis for the different remote prior glycosylation preferences of the GalNAc-Ts.
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Authors:
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The interdomain flexible linker of the polypeptide GalNAc transferases dictates their long-range glycosylation preferences.,Rivas ML, Lira-Navarrete E, Daniel EJP, Companon I, Coelho H, Diniz A, Jimenez-Barbero J, Peregrina JM, Clausen H, Corzana F, Marcelo F, Jimenez-Oses G, Gerken TA, Hurtado-Guerrero R Nat Commun. 2017 Dec 5;8(1):1959. doi: 10.1038/s41467-017-02006-0. PMID:29208955<ref>PMID:29208955</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 5nqa" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Polypeptide N-acetylgalactosaminyltransferase]]
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[[Category: Clausen, H]]
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[[Category: Coelho, H]]
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[[Category: Companon, I]]
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[[Category: Corzana, F]]
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[[Category: Daniel, E J.P]]
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[[Category: Diniz, A]]
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[[Category: Gerken, T A]]
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[[Category: Hurtado-Guerrero, R]]
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[[Category: Jimenez-Barbero, J]]
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[[Category: Jimenez-Oses, G]]
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[[Category: Lira-Navarrete, E]]
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[[Category: Marcelo, F]]
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[[Category: Peregrina, J M]]
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[[Category: Rivas, M de las]]
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[[Category: Chimera]]
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[[Category: Flexible linker]]
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[[Category: Galnac-t2]]
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[[Category: Galnac-t4]]
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[[Category: Glycosylation preference]]
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[[Category: Std-nmr]]
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[[Category: Transferase]]

Revision as of 06:11, 20 December 2017

Crystal structure of GalNAc-T4 in complex with the monoglycopeptide 3

5nqa, resolution 1.90Å

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