5nqa
From Proteopedia
(Difference between revisions)
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- | '''Unreleased structure''' | ||
- | + | ==Crystal structure of GalNAc-T4 in complex with the monoglycopeptide 3== | |
+ | <StructureSection load='5nqa' size='340' side='right' caption='[[5nqa]], [[Resolution|resolution]] 1.90Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[5nqa]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NQA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5NQA FirstGlance]. <br> | ||
+ | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NGA:N-ACETYL-D-GALACTOSAMINE'>NGA</scene></td></tr> | ||
+ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Polypeptide_N-acetylgalactosaminyltransferase Polypeptide N-acetylgalactosaminyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.41 2.4.1.41] </span></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5nqa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nqa OCA], [http://pdbe.org/5nqa PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5nqa RCSB], [http://www.ebi.ac.uk/pdbsum/5nqa PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5nqa ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [[http://www.uniprot.org/uniprot/GALT4_HUMAN GALT4_HUMAN]] Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a highest activity toward Muc7, EA2 and Muc2, with a lowest activity than GALNT2. Glycosylates 'Thr-57' of SELPLG. | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | The polypeptide GalNAc-transferases (GalNAc-Ts), that initiate mucin-type O-glycosylation, consist of a catalytic and a lectin domain connected by a flexible linker. In addition to recognizing polypeptide sequence, the GalNAc-Ts exhibit unique long-range N- and/or C-terminal prior glycosylation (GalNAc-O-Ser/Thr) preferences modulated by the lectin domain. Here we report studies on GalNAc-T4 that reveal the origins of its unique N-terminal long-range glycopeptide specificity, which is the opposite of GalNAc-T2. The GalNAc-T4 structure bound to a monoglycopeptide shows that the GalNAc-binding site of its lectin domain is rotated relative to the homologous GalNAc-T2 structure, explaining their different long-range preferences. Kinetics and molecular dynamics simulations on several GalNAc-T2 flexible linker constructs show altered remote prior glycosylation preferences, confirming that the flexible linker dictates the rotation of the lectin domain, thus modulating the GalNAc-Ts' long-range preferences. This work for the first time provides the structural basis for the different remote prior glycosylation preferences of the GalNAc-Ts. | ||
- | + | The interdomain flexible linker of the polypeptide GalNAc transferases dictates their long-range glycosylation preferences.,Rivas ML, Lira-Navarrete E, Daniel EJP, Companon I, Coelho H, Diniz A, Jimenez-Barbero J, Peregrina JM, Clausen H, Corzana F, Marcelo F, Jimenez-Oses G, Gerken TA, Hurtado-Guerrero R Nat Commun. 2017 Dec 5;8(1):1959. doi: 10.1038/s41467-017-02006-0. PMID:29208955<ref>PMID:29208955</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
+ | <div class="pdbe-citations 5nqa" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Polypeptide N-acetylgalactosaminyltransferase]] | ||
+ | [[Category: Clausen, H]] | ||
+ | [[Category: Coelho, H]] | ||
+ | [[Category: Companon, I]] | ||
+ | [[Category: Corzana, F]] | ||
+ | [[Category: Daniel, E J.P]] | ||
+ | [[Category: Diniz, A]] | ||
+ | [[Category: Gerken, T A]] | ||
+ | [[Category: Hurtado-Guerrero, R]] | ||
+ | [[Category: Jimenez-Barbero, J]] | ||
+ | [[Category: Jimenez-Oses, G]] | ||
+ | [[Category: Lira-Navarrete, E]] | ||
+ | [[Category: Marcelo, F]] | ||
+ | [[Category: Peregrina, J M]] | ||
+ | [[Category: Rivas, M de las]] | ||
+ | [[Category: Chimera]] | ||
+ | [[Category: Flexible linker]] | ||
+ | [[Category: Galnac-t2]] | ||
+ | [[Category: Galnac-t4]] | ||
+ | [[Category: Glycosylation preference]] | ||
+ | [[Category: Std-nmr]] | ||
+ | [[Category: Transferase]] |
Revision as of 06:11, 20 December 2017
Crystal structure of GalNAc-T4 in complex with the monoglycopeptide 3
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Categories: Polypeptide N-acetylgalactosaminyltransferase | Clausen, H | Coelho, H | Companon, I | Corzana, F | Daniel, E J.P | Diniz, A | Gerken, T A | Hurtado-Guerrero, R | Jimenez-Barbero, J | Jimenez-Oses, G | Lira-Navarrete, E | Marcelo, F | Peregrina, J M | Rivas, M de las | Chimera | Flexible linker | Galnac-t2 | Galnac-t4 | Glycosylation preference | Std-nmr | Transferase