5vq1
From Proteopedia
(Difference between revisions)
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<StructureSection load='5vq1' size='340' side='right' caption='[[5vq1]], [[Resolution|resolution]] 1.78Å' scene=''> | <StructureSection load='5vq1' size='340' side='right' caption='[[5vq1]], [[Resolution|resolution]] 1.78Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[5vq1]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VQ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5VQ1 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5vq1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VQ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5VQ1 FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr> | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5vp7|5vp7]], [[5vpi|5vpi]], [[5vpy|5vpy]], [[5vpz|5vpz]], [[5vq0|5vq0]], [[5vq2|5vq2]], [[5vq8|5vq8]], [[5vq6|5vq6]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5vp7|5vp7]], [[5vpi|5vpi]], [[5vpy|5vpy]], [[5vpz|5vpz]], [[5vq0|5vq0]], [[5vq2|5vq2]], [[5vq8|5vq8]], [[5vq6|5vq6]]</td></tr> | ||
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">KRAS, KRAS2, RASK2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5vq1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vq1 OCA], [http://pdbe.org/5vq1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5vq1 RCSB], [http://www.ebi.ac.uk/pdbsum/5vq1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5vq1 ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5vq1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vq1 OCA], [http://pdbe.org/5vq1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5vq1 RCSB], [http://www.ebi.ac.uk/pdbsum/5vq1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5vq1 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
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== Function == | == Function == | ||
[[http://www.uniprot.org/uniprot/RASK_HUMAN RASK_HUMAN]] Ras proteins bind GDP/GTP and possess intrinsic GTPase activity. | [[http://www.uniprot.org/uniprot/RASK_HUMAN RASK_HUMAN]] Ras proteins bind GDP/GTP and possess intrinsic GTPase activity. | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | K-Ras, a molecular switch that regulates cell growth, apoptosis and metabolism, is activated when it undergoes a conformation change upon binding GTP and is deactivated following the hydrolysis of GTP to GDP. Hydrolysis of GTP in water is accelerated by coordination to K-Ras, where GTP adopts a high-energy conformation approaching the transition state. The G12A mutation reduces intrinsic K-Ras GTP hydrolysis by an unexplained mechanism. Here, crystal structures of G12A K-Ras in complex with GDP, GTP, GTPgammaS and GppNHp, and of Q61A K-Ras in complex with GDP, are reported. In the G12A K-Ras-GTP complex, the switch I region undergoes a significant reorganization such that the Tyr32 side chain points towards the GTP-binding pocket and forms a hydrogen bond to the GTP gamma-phosphate, effectively stabilizing GTP in its precatalytic state, increasing the activation energy required to reach the transition state and contributing to the reduced intrinsic GTPase activity of G12A K-Ras mutants. | ||
+ | |||
+ | Structural insight into the rearrangement of the switch I region in GTP-bound G12A K-Ras.,Xu S, Long BN, Boris GH, Chen A, Ni S, Kennedy MA Acta Crystallogr D Struct Biol. 2017 Dec 1;73(Pt 12):970-984. doi:, 10.1107/S2059798317015418. Epub 2017 Nov 10. PMID:29199977<ref>PMID:29199977</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 5vq1" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Human]] | ||
[[Category: Boris, G]] | [[Category: Boris, G]] | ||
[[Category: Kennedy, M A]] | [[Category: Kennedy, M A]] |
Revision as of 06:42, 20 December 2017
Crystal structure of human KRAS Q61A mutant in complex with GDP
|
Categories: Human | Boris, G | Kennedy, M A | Long, B | Ni, S | Xu, S | Hydrolase | Oncogenic mutant