2d1g
From Proteopedia
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|PDB= 2d1g |SIZE=350|CAPTION= <scene name='initialview01'>2d1g</scene>, resolution 1.750Å | |PDB= 2d1g |SIZE=350|CAPTION= <scene name='initialview01'>2d1g</scene>, resolution 1.750Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= | + | |LIGAND= <scene name='pdbligand=DVT:DECAVANADATE'>DVT</scene>, <scene name='pdbligand=ETE:2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL'>ETE</scene>, <scene name='pdbligand=ETX:2-ETHOXYETHANOL'>ETX</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene>, <scene name='pdbligand=VO4:VANADATE+ION'>VO4</scene> |
| - | |ACTIVITY= [http://en.wikipedia.org/wiki/Acid_phosphatase Acid phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2] | + | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Acid_phosphatase Acid phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2] </span> |
|GENE= acpA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=264 Francisella tularensis subsp. novicida]) | |GENE= acpA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=264 Francisella tularensis subsp. novicida]) | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY= | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d1g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d1g OCA], [http://www.ebi.ac.uk/pdbsum/2d1g PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2d1g RCSB]</span> | ||
}} | }} | ||
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[[Category: Reilly, T J.]] | [[Category: Reilly, T J.]] | ||
[[Category: Tanner, J J.]] | [[Category: Tanner, J J.]] | ||
| - | [[Category: DVT]] | ||
| - | [[Category: ETE]] | ||
| - | [[Category: ETX]] | ||
| - | [[Category: PGE]] | ||
| - | [[Category: UNX]] | ||
| - | [[Category: VO4]] | ||
[[Category: acid phosphatase]] | [[Category: acid phosphatase]] | ||
[[Category: acpa]] | [[Category: acpa]] | ||
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[[Category: vanadate]] | [[Category: vanadate]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:29:00 2008'' |
Revision as of 23:29, 30 March 2008
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| , resolution 1.750Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | , , , , , | ||||||
| Gene: | acpA (Francisella tularensis subsp. novicida) | ||||||
| Activity: | Acid phosphatase, with EC number 3.1.3.2 | ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Structure of Francisella tularensis Acid Phosphatase A (AcpA) bound to orthovanadate
Overview
AcpA is a respiratory burst-inhibiting acid phosphatase from the Centers for Disease Control and Prevention Category A bioterrorism agent Francisella tularensis and prototype of a superfamily of acid phosphatases and phospholipases C. We report the 1.75-A resolution crystal structure of AcpA complexed with the inhibitor orthovanadate, which is the first structure of any F. tularensis protein and the first for any member of this superfamily. The core domain is a twisted 8-stranded beta-sheet flanked by three alpha-helices on either side, with the active site located above the carboxyl-terminal edge of the beta-sheet. This architecture is unique among acid phosphatases and resembles that of alkaline phosphatase. Unexpectedly, the active site features a serine nucleophile and metal ion with octahedral coordination. Structure-based sequence analysis of the AcpA superfamily predicts that the hydroxyl nucleophile and metal center are also present in AcpA-like phospholipases C. These results imply a phospholipase C catalytic mechanism that is radically different from that of zinc metallophospholipases.
About this Structure
2D1G is a Single protein structure of sequence from Francisella tularensis subsp. novicida. Full crystallographic information is available from OCA.
Reference
Structure of Francisella tularensis AcpA: prototype of a unique superfamily of acid phosphatases and phospholipases C., Felts RL, Reilly TJ, Tanner JJ, J Biol Chem. 2006 Oct 6;281(40):30289-98. Epub 2006 Aug 9. PMID:16899453
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