1pdm
From Proteopedia
(Difference between revisions)
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==Fitting of gp8 structure into the cryoEM reconstruction of the bacteriophage T4 baseplate== | ==Fitting of gp8 structure into the cryoEM reconstruction of the bacteriophage T4 baseplate== | ||
<StructureSection load='1pdm' size='340' side='right' caption='[[1pdm]], [[Resolution|resolution]] 12.00Å' scene=''> | <StructureSection load='1pdm' size='340' side='right' caption='[[1pdm]], [[Resolution|resolution]] 12.00Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[1pdm]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[1pdm]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PDM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PDM FirstGlance]. <br> |
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1n80|1n80]]</td></tr> | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1n80|1n80]]</td></tr> | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pdm OCA], [http://pdbe.org/1pdm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1pdm RCSB], [http://www.ebi.ac.uk/pdbsum/1pdm PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pdm OCA], [http://pdbe.org/1pdm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1pdm RCSB], [http://www.ebi.ac.uk/pdbsum/1pdm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1pdm ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
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Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pd/1pdm_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pd/1pdm_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pdm ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Enterobacteria phage t4]] |
[[Category: Arisaka, F]] | [[Category: Arisaka, F]] | ||
[[Category: Chipman, P R]] | [[Category: Chipman, P R]] | ||
Revision as of 07:40, 15 February 2018
Fitting of gp8 structure into the cryoEM reconstruction of the bacteriophage T4 baseplate
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