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6ax6
From Proteopedia
(Difference between revisions)
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| - | '''Unreleased structure''' | ||
| - | The | + | ==The crystal structure of a lysyl hydroxylase from Acanthamoeba polyphaga mimivirus== |
| + | <StructureSection load='6ax6' size='340' side='right' caption='[[6ax6]], [[Resolution|resolution]] 2.24Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[6ax6]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6AX6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6AX6 FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr> | ||
| + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Oxidoreductase Oxidoreductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.14.11.4 1.14.11.4] </span></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ax6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ax6 OCA], [http://pdbe.org/6ax6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ax6 RCSB], [http://www.ebi.ac.uk/pdbsum/6ax6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ax6 ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Collagen lysyl hydroxylases (LH1-3) are Fe(2+)- and 2-oxoglutarate (2-OG)-dependent oxygenases that maintain extracellular matrix homeostasis. High LH2 levels cause stable collagen cross-link accumulations that promote fibrosis and cancer progression. However, developing LH antagonists will require structural insights. Here, we report a 2 A crystal structure and X-ray scattering on dimer assemblies for the LH domain of L230 in Acanthamoeba polyphaga mimivirus. Loop residues in the double-stranded beta-helix core generate a tail-to-tail dimer. A stabilizing hydrophobic leucine locks into an aromatic tyrosine-pocket on the opposite subunit. An active site triad coordinates Fe(2+). The two active sites flank a deep surface cleft that suggest dimerization creates a collagen-binding site. Loss of Fe(2+)-binding disrupts the dimer. Dimer disruption and charge reversal in the cleft increase Km and reduce LH activity. Ectopic L230 expression in tumors promotes collagen cross-linking and metastasis. These insights suggest inhibitor targets for fibrosis and cancer. | ||
| - | + | Pro-metastatic collagen lysyl hydroxylase dimer assemblies stabilized by Fe(2+)-binding.,Guo HF, Tsai CL, Terajima M, Tan X, Banerjee P, Miller MD, Liu X, Yu J, Byemerwa J, Alvarado S, Kaoud TS, Dalby KN, Bota-Rabassedas N, Chen Y, Yamauchi M, Tainer JA, Phillips GN Jr., Kurie JM Nat Commun. 2018 Feb 6;9(1):512. doi: 10.1038/s41467-018-02859-z. PMID:29410444<ref>PMID:29410444</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | + | </div> | |
| - | + | <div class="pdbe-citations 6ax6" style="background-color:#fffaf0;"></div> | |
| - | + | == References == | |
| - | + | <references/> | |
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| - | [[Category: | + | [[Category: Oxidoreductase]] |
[[Category: Alvarado, S]] | [[Category: Alvarado, S]] | ||
| - | [[Category: Tainer, J | + | [[Category: Guo, H]] |
| + | [[Category: Kurie, J M]] | ||
| + | [[Category: Miller, M D]] | ||
| + | [[Category: Phillips, G N]] | ||
| + | [[Category: Tainer, J A]] | ||
| + | [[Category: Tsai, C]] | ||
| + | [[Category: Collagen]] | ||
| + | [[Category: Dimer]] | ||
| + | [[Category: Dioxygenase]] | ||
| + | [[Category: Double-stranded ?-helix]] | ||
Revision as of 07:24, 22 February 2018
The crystal structure of a lysyl hydroxylase from Acanthamoeba polyphaga mimivirus
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Categories: Oxidoreductase | Alvarado, S | Guo, H | Kurie, J M | Miller, M D | Phillips, G N | Tainer, J A | Tsai, C | Collagen | Dimer | Dioxygenase | Double-stranded ?-helix
