Sandbox Reserved 1392

From Proteopedia

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{{Sandbox_Reserved_HLSC322}}<!-- PLEASE ADD YOUR CONTENT BELOW HERE -->
{{Sandbox_Reserved_HLSC322}}<!-- PLEASE ADD YOUR CONTENT BELOW HERE -->
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==Human E-cadherin Protein==
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==DNA Structure==
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<StructureSection load='1bna' size='340' side='right' caption='Caption for this structure' scene=''>
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<StructureSection load='2o72' size='340' side='right' caption='Caption for this structure' scene=''>
This is a default text for your page ''''''. Click above on '''edit this page''' to modify. Be careful with the &lt; and &gt; signs.
This is a default text for your page ''''''. Click above on '''edit this page''' to modify. Be careful with the &lt; and &gt; signs.
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
== Function ==
== Function ==
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Epithelial-cadherin (1-213), or E-cadherin, is a calcium-dependent cell adhesion protein. E-cadherin help regulate bacterial interaction with mammalian tissues and play a key role in blastula formation.
 
== Disease ==
== Disease ==
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E-cadherin is a tumor suppressor gene. Degradation or loss of function of the gene is thought to be linked to metastasis and proliferation of tumors. In particular, mutations in the E-cadherin gene are linked to a series of cancers, including gastric, breast, colorectal, ovarian, and thyroid cancers.
 
== Relevance ==
== Relevance ==
== Structural highlights ==
== Structural highlights ==
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<scene name='77/777712/Backbone_of_molecule/1'>Back bone of E-cadherin</scene>
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E-cadherin is 213 amino acids long. The molecule is comprised of five cadherin extensions, a transmembrane region, and a cytoplasmic tail. In epithelial cells, E-cadherin contains cell-to-cell junctions often located close to actin-filaments within the cytoskeleton of a cell. E-cadherin is a homodimer, meaning that it is made up of two identical subunits.
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DNA is made up of <scene name='77/777712/Base_pairs_of_dna/1'>[[base pairs]</scene>].
This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.
This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.
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</StructureSection>
</StructureSection>
== References ==
== References ==
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https://www.ebi.ac.uk/pdbe/entry/pdb/2o72/
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<references/>
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http://www.uniprot.org/uniprot/P12830
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https://en.wikipedia.org/wiki/CDH1_(gene)
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Revision as of 21:42, 22 February 2018

This Sandbox is Reserved from January through July 31, 2018 for use in the course HLSC322: Principles of Genetics and Genomics taught by Genevieve Houston-Ludlam at the University of Maryland, College Park, USA. This reservation includes Sandbox Reserved 1311 through Sandbox Reserved 1430.
To get started:
  • Click the edit this page tab at the top. Save the page after each step, then edit it again.
  • Click the 3D button (when editing, above the wikitext box) to insert Jmol.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Help:Editing

DNA Structure

Caption for this structure

Drag the structure with the mouse to rotate

References

  1. Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
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