This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1qkb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
 +
==OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KVK==
==OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KVK==
<StructureSection load='1qkb' size='340' side='right' caption='[[1qkb]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
<StructureSection load='1qkb' size='340' side='right' caption='[[1qkb]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
Line 5: Line 6:
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=IUM:URANYL+(VI)+ION'>IUM</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=IUM:URANYL+(VI)+ION'>IUM</scene></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1qka|1qka]], [[1ola|1ola]], [[2olb|2olb]], [[1olc|1olc]], [[1jet|1jet]], [[1jeu|1jeu]], [[1jev|1jev]], [[1rkm|1rkm]], [[2rkm|2rkm]], [[1b05|1b05]], [[1b0h|1b0h]], [[1b1h|1b1h]], [[1b2h|1b2h]], [[1b3f|1b3f]], [[1b3g|1b3g]], [[1b3h|1b3h]], [[1b3l|1b3l]], [[1b4h|1b4h]], [[1b4z|1b4z]], [[1b5h|1b5h]], [[1b5i|1b5i]], [[1b5j|1b5j]], [[1b6h|1b6h]], [[1b7h|1b7h]], [[1b9j|1b9j]], [[1b32|1b32]], [[1b40|1b40]], [[1b46|1b46]], [[1b51|1b51]], [[1b52|1b52]], [[1b58|1b58]]</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1qka|1qka]], [[1ola|1ola]], [[2olb|2olb]], [[1olc|1olc]], [[1jet|1jet]], [[1jeu|1jeu]], [[1jev|1jev]], [[1rkm|1rkm]], [[2rkm|2rkm]], [[1b05|1b05]], [[1b0h|1b0h]], [[1b1h|1b1h]], [[1b2h|1b2h]], [[1b3f|1b3f]], [[1b3g|1b3g]], [[1b3h|1b3h]], [[1b3l|1b3l]], [[1b4h|1b4h]], [[1b4z|1b4z]], [[1b5h|1b5h]], [[1b5i|1b5i]], [[1b5j|1b5j]], [[1b6h|1b6h]], [[1b7h|1b7h]], [[1b9j|1b9j]], [[1b32|1b32]], [[1b40|1b40]], [[1b46|1b46]], [[1b51|1b51]], [[1b52|1b52]], [[1b58|1b58]]</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qkb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qkb OCA], [http://pdbe.org/1qkb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qkb RCSB], [http://www.ebi.ac.uk/pdbsum/1qkb PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qkb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qkb OCA], [http://pdbe.org/1qkb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qkb RCSB], [http://www.ebi.ac.uk/pdbsum/1qkb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1qkb ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
Line 13: Line 14:
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qk/1qkb_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qk/1qkb_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qkb ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 28: Line 29:
</div>
</div>
<div class="pdbe-citations 1qkb" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 1qkb" style="background-color:#fffaf0;"></div>
- 
-
==See Also==
 
-
*[[Oligopeptide-binding protein|Oligopeptide-binding protein]]
 
== References ==
== References ==
<references/>
<references/>

Revision as of 08:09, 24 February 2018

OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KVK

1qkb, resolution 1.80Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools