Sandbox Reserved 1369
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There were13 important binding residues from MIG-6_s1 and 9 residues from EGFR kinase with binding free energies less than-1 kcal/mol. The 13 residues of MIG-6_s1 comprise Ser337, Leu338, and Ser361 whereas the 9 residues of EGFR kinase were Thr885, Glu904, and Ile929. Some of these residues, such as Pro910, had the values of the binding free energies less than or equal to -4 kcal/mol. Five residues of MIG-6_s1, namely Leu342, <scene name='77/777689/Ser337/1'>Ser337</scene>, and seven residues of EGFR kinase, namely Glu907, had their binding free energies approximately -1.0 kcal/mol. | There were13 important binding residues from MIG-6_s1 and 9 residues from EGFR kinase with binding free energies less than-1 kcal/mol. The 13 residues of MIG-6_s1 comprise Ser337, Leu338, and Ser361 whereas the 9 residues of EGFR kinase were Thr885, Glu904, and Ile929. Some of these residues, such as Pro910, had the values of the binding free energies less than or equal to -4 kcal/mol. Five residues of MIG-6_s1, namely Leu342, <scene name='77/777689/Ser337/1'>Ser337</scene>, and seven residues of EGFR kinase, namely Glu907, had their binding free energies approximately -1.0 kcal/mol. | ||
- | These are the hydrogen bonds formed between residues <scene name='77/777689/Asn343/1'> | + | These are the hydrogen bonds formed between residues <scene name='77/777689/Asn343/1'>Asn343</scene> and the residues Glu904, Gly906, Arg908, Gln911 and Ile929 of EGFR kinase. Strong, medium and weak hydrogen-bond interactions were defined as having simulated hydrogen bond occupancy of > 75%, 50–75%, and < 50%, respectively. |
We showed that there were six “hot spot” residues on EGFR kinase, namely Glu904, Glu907, Arg908, Gln911, Met928 and Ile929; and eight “hot spot” residues on MIG-6_s1, namely <scene name='77/777689/Leu338/1’>Leu338</scene>,. | We showed that there were six “hot spot” residues on EGFR kinase, namely Glu904, Glu907, Arg908, Gln911, Met928 and Ile929; and eight “hot spot” residues on MIG-6_s1, namely <scene name='77/777689/Leu338/1’>Leu338</scene>,. |
Revision as of 20:12, 28 February 2018
This Sandbox is Reserved from January through July 31, 2018 for use in the course HLSC322: Principles of Genetics and Genomics taught by Genevieve Houston-Ludlam at the University of Maryland, College Park, USA. This reservation includes Sandbox Reserved 1311 through Sandbox Reserved 1430. |
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EGFR kinase domain in complex with Mitogen-inducible gene 6 protein
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References
<2. http://www.rcsb.org/structure/4ZJV 3. https://www.ncbi.nlm.nih.gov/pubmed/25735773 4. https://www.ncbi.nlm.nih.gov/pubmed/16377102 5. https://www.ebi.ac.uk/pdbe/entry/pdb/4zjv/citations>