2fal
From Proteopedia
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|PDB= 2fal |SIZE=350|CAPTION= <scene name='initialview01'>2fal</scene>, resolution 1.8Å | |PDB= 2fal |SIZE=350|CAPTION= <scene name='initialview01'>2fal</scene>, resolution 1.8Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand=CYN:CYANIDE+ION'>CYN</scene> | + | |LIGAND= <scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=CYN:CYANIDE+ION'>CYN</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY= | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fal FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fal OCA], [http://www.ebi.ac.uk/pdbsum/2fal PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2fal RCSB]</span> | ||
}} | }} | ||
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[[Category: Moser, C.]] | [[Category: Moser, C.]] | ||
[[Category: Rizzi, M.]] | [[Category: Rizzi, M.]] | ||
| - | [[Category: CYN]] | ||
| - | [[Category: HEM]] | ||
[[Category: oxygen storage]] | [[Category: oxygen storage]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:00:07 2008'' |
Revision as of 00:00, 31 March 2008
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| , resolution 1.8Å | |||||||
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| Ligands: | , , | ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
X-RAY CRYSTAL STRUCTURE OF FERRIC APLYSIA LIMACINA MYOGLOBIN IN DIFFERENT LIGANDED STATES
Overview
The X-ray crystal structure of the ligand-free ferric form of Aplysia limacina myoglobin (pH 6.0) has been refined at 1.7 A resolution (R = 15.1%), and its cyanide, thiocyanate and imidazole derivatives studied by difference Fourier techniques at atomic resolution. The crystallographic R-factors of the three different derivatives reported are 16.1%, 16.1% and 15.6% at 1.8 A, 2.0 A and 2.0 A resolution, respectively. The present results have been analyzed in parallel with previous crystallographic studies on the molecular structures of the fluoride and azide derivatives of ferric Aplysia limacina myoglobin. Ligand binding to the distal site of the heme pocket results in different networks of hydrogen bonds involving to various degrees the bound ligand, residue Arg(66)E10, the heme propionate III, ordered water molecules and/or protein backbone atoms from the CD region. In particular, Arg(66)E10 stabilizes the bound ligand and compensates for the absence of the hydrogen bond donor residue HisE7, commonly present in oxygen-carrying globins.
About this Structure
2FAL is a Single protein structure of sequence from Aplysia limacina. Full crystallographic information is available from OCA.
Reference
X-ray crystal structure of ferric Aplysia limacina myoglobin in different liganded states., Conti E, Moser C, Rizzi M, Mattevi A, Lionetti C, Coda A, Ascenzi P, Brunori M, Bolognesi M, J Mol Biol. 1993 Oct 5;233(3):498-508. PMID:8411158
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