ATP synthase is shown here to the right ==>
It is depicted in 3D with each protein shown in a different colour.
Tools for exploring ATP synthase in 3D
- left mouse button to rotate the protein model.
- middle mouse button or scroll wheel to zoom (option-click on a Mac)
- right mouse button for more options and information (control-click on a Mac).
- green text - click to load a new 3D scene
Have a go yourself now ==>
Exploring the ATP synthase molecule
ATP synthase is a cellular molecular motor found in the mitochondrial membrane of humans, and also in other organisms. It has a role in the generation of ATP, the cells energy currency. This large molecule is built up of a number of different groups of proteins: the F0, the F1, and the stator - each group has an important role to play.
The F1 and Axle
The contains an α (alpha) chain (shown in light blue) and a β (beta) chain (shown in dark blue). The , rotates (like the axle on a car), and is composed mainly of the protein chain. The axle rotates with three 120° steps, putting the β chains into three different conformations, allowing the ADP and phosphate to bind, the high energy bond to form and the release of ATP.
Q1: Describe how the protein chains are arranged to comprise the F1 region?
Q2: What is the role of the axle, explain how it acts on the β subunits?
ADP and ATP are bound in the nucleotide binding sites
The F1 shown here has both adenosine diphosphate (ADP) and adenosine triphosphate (ATP) bound in the . See if you can zoom in on the ATP identify the phosphate atoms (orange), sugar moiety and the base moiety. ==>
The three nucleotide binding sites, primarily located in the β subunits, carry out active ATP synthesis. The sites primarily located in the three α subunits are non-catalytic and exchange bound nucleotide very slowly. They are thought to be a carry over from evolution, and now play a more regulatory role.
Q3: How many phosphates atoms (orange) does ATP have, and how does this differ to ADP?
Q4: Between which atoms is the high energy bond formed, and in which location in the ATP synthase does the catalysis occur (which chain)?
The F0 region
is a circular rotor that is formed of transmembrane α-helices located in the inner mitochondrial membrane. The positively charged hydrogen ions (protons) travel around the circular F0 motor, and turning the F0 rotor in the process, much like a waterwheel. Firstly, the hydrogen ion binds a negatively charged residue (amino acid) within the transmembrane α-helices of the F0 motor. This action then allows the F0 to turn, as it can only turn in the hydrophobic membrane when a hydrogen ion is bound to these amino acids, as it neutralises the amino acids negative charge. Secondly, after a full rotation, the hydrogen is removed from the rotor by an amino acid, into a charged pocket, and then is passed to the opposite side of the membrane.
Q5: What is the location and role of the F0 region. How many Transmembrane α-helices are there?
Q6: Name two key amino acids, one acidic and one basic, that influence the hydrogen ions's path within the the F0. Which one acts like a broom sweeping the protons off the rotor?
Summary
The synthesis of ATP, the cells energy currency, involves a number of steps performed by a tiny molecular motor found in the mitochondrial membrane, called ATP synthase.
Key Terms
ATP = Adenosine triphosphate (nucleotide)
ADP = Adenosine diphosphate (nucleotide)
Aspartic acid = An acidic amino acid (negatively charged)
Glutamic acid = An acidic amino acid (negatively charged)
Arginine = A basic amino acid (positively charged)
Transmembrane α-helices = Membrane-spanning α-helices
ATP synthase = A molecular motor that generates ATP
Hydrogen ion = A hydrogen atom that has lost (or gained) an electron. A positively charged hydrogen ion is also referred to as a proton
Moiety = A "part" or "functional group" of a molecule
You were viewing the molecular model using the Jmol viewer within Proteopedia.
