5oon
From Proteopedia
(Difference between revisions)
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<StructureSection load='5oon' size='340' side='right' caption='[[5oon]], [[Resolution|resolution]] 2.60Å' scene=''> | <StructureSection load='5oon' size='340' side='right' caption='[[5oon]], [[Resolution|resolution]] 2.60Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[5oon]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OON OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5OON FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5oon]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Eco57 Eco57]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OON OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5OON FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr> | ||
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">uppP, bacA, upk, Z4410, ECs3940 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83334 ECO57])</td></tr> | ||
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Undecaprenyl-diphosphate_phosphatase Undecaprenyl-diphosphate phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.27 3.6.1.27] </span></td></tr> | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Undecaprenyl-diphosphate_phosphatase Undecaprenyl-diphosphate phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.27 3.6.1.27] </span></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5oon FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5oon OCA], [http://pdbe.org/5oon PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5oon RCSB], [http://www.ebi.ac.uk/pdbsum/5oon PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5oon ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5oon FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5oon OCA], [http://pdbe.org/5oon PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5oon RCSB], [http://www.ebi.ac.uk/pdbsum/5oon PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5oon ProSAT]</span></td></tr> | ||
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== Function == | == Function == | ||
[[http://www.uniprot.org/uniprot/UPPP_ECO57 UPPP_ECO57]] Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin. | [[http://www.uniprot.org/uniprot/UPPP_ECO57 UPPP_ECO57]] Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin. | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | As a protective envelope surrounding the bacterial cell, the peptidoglycan sacculus is a site of vulnerability and an antibiotic target. Peptidoglycan components, assembled in the cytoplasm, are shuttled across the membrane in a cycle that uses undecaprenyl-phosphate. A product of peptidoglycan synthesis, undecaprenyl-pyrophosphate, is converted to undecaprenyl-phosphate for reuse in the cycle by the membrane integral pyrophosphatase, BacA. To understand how BacA functions, we determine its crystal structure at 2.6 A resolution. The enzyme is open to the periplasm and to the periplasmic leaflet via a pocket that extends into the membrane. Conserved residues map to the pocket where pyrophosphorolysis occurs. BacA incorporates an interdigitated inverted topology repeat, a topology type thus far only reported in transporters and channels. This unique topology raises issues regarding the ancestry of BacA, the possibility that BacA has alternate active sites on either side of the membrane and its possible function as a flippase. | ||
+ | |||
+ | Crystal structure of undecaprenyl-pyrophosphate phosphatase and its role in peptidoglycan biosynthesis.,El Ghachi M, Howe N, Huang CY, Olieric V, Warshamanage R, Touze T, Weichert D, Stansfeld PJ, Wang M, Kerff F, Caffrey M Nat Commun. 2018 Mar 14;9(1):1078. doi: 10.1038/s41467-018-03477-5. PMID:29540682<ref>PMID:29540682</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 5oon" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Eco57]] | ||
[[Category: Undecaprenyl-diphosphate phosphatase]] | [[Category: Undecaprenyl-diphosphate phosphatase]] | ||
[[Category: Caffrey, M]] | [[Category: Caffrey, M]] |
Revision as of 07:02, 28 March 2018
Structure of Undecaprenyl-Pyrophosphate Phosphatase, BacA
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Categories: Eco57 | Undecaprenyl-diphosphate phosphatase | Caffrey, M | Ghachi, M E.I | Howe, N | Huang, C Y | Kerff, F | Olieric, V | Stansfeld, P | Touze, T | Wang, M | Warshamanage, R | Weichert, D | Antibiotic | Bacterial cell wall | Enzyme mechanism | Escherichia coli | Imisx | In meso in situ serial crystallography | Interdigitated inverted topology repeat | Lipid cubic phase | Membrane protein | Peptidoglycan | Phosphatase | Pyrophosphorylase | Undecaprenyl-pyrophosphate