1v6b
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| + | |||
==Solution structure of the third PDZ domain of mouse harmonin== | ==Solution structure of the third PDZ domain of mouse harmonin== | ||
<StructureSection load='1v6b' size='340' side='right' caption='[[1v6b]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | <StructureSection load='1v6b' size='340' side='right' caption='[[1v6b]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | ||
| Line 4: | Line 5: | ||
<table><tr><td colspan='2'>[[1v6b]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V6B FirstGlance]. <br> | <table><tr><td colspan='2'>[[1v6b]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V6B FirstGlance]. <br> | ||
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RIKEN cDNA 2010016F01 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr> | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RIKEN cDNA 2010016F01 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr> | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v6b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6b OCA], [http://pdbe.org/1v6b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1v6b RCSB], [http://www.ebi.ac.uk/pdbsum/1v6b PDBsum], [http://www.topsan.org/Proteins/RSGI/1v6b TOPSAN]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v6b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6b OCA], [http://pdbe.org/1v6b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1v6b RCSB], [http://www.ebi.ac.uk/pdbsum/1v6b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1v6b ProSAT], [http://www.topsan.org/Proteins/RSGI/1v6b TOPSAN]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| Line 12: | Line 13: | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v6/1v6b_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v6/1v6b_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1v6b ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Harmonin|Harmonin]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
Revision as of 08:04, 28 March 2018
Solution structure of the third PDZ domain of mouse harmonin
| |||||||||||
Categories: Lk3 transgenic mice | Inoue, M | Kigawa, T | Koshiba, S | Nameki, N | Structural genomic | Saito, K | Yamada, K | Yokoyama, S | Protein binding | Rsgi | Ush1 | Usher syndrome
