User:David Ryskamp/Sandbox1

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Line 12: Line 12:
<table><tr><td colspan='2'>
<table><tr><td colspan='2'>
-
<tr id='A2'><td class="sblockLbl"><b>[[A2|A2:]]</b></td><td class="sblockDat"><scene name='78/782616/Asn105_a2/2'>Asparagine 105</scene></td><td class="sblockDat">[C]</td></tr></tr>
+
<tr id='A2'><td class="sblockLbl"><b>[[A2|A2:]]</b></td><td class="sblockDat"><scene name='78/782616/Asn105_a2/2'>Asparagine 105</scene></td><td class="sblockDat">Cα</td></tr></tr>
-
<tr id='A3'><td class="sblockLbl"><b>[[A3|A3:]]</b></td><td class="sblockDat"></td></tr>
+
<tr id='A3'><td class="sblockLbl"><b>[[A3|A3:]]</b></td><td class="sblockDat"><scene name='78/782616/Lys174-a3/2'>Lysine 174</scene></td><td class="sblockDat">Cα</td></tr></tr></tr>
-
<tr id='A4'><td class="sblockLbl"><b>[[A4|A4:]]</b></td><td class="sblockDat"></td></tr>
+
<tr id='A4'><td class="sblockLbl"><b>[[A4|A4:]]</b></td><td class="sblockDat"><scene name='78/782616/Asn100-a4/2'>Asparagine 100</scene></td><td class="sblockDat">Amine & Cα</td></tr></tr></tr>
-
<tr id='A4'><td class="sblockLbl"><b>[[A4|A4:]]</b></td><td class="sblockDat"></td></tr>
+
<tr id='A4'><td class="sblockLbl"><b>[[A4|A4:]]</b></td><td class="sblockDat"><scene name='78/782616/Ser127-a4/1'>Serine 127</scene></td><td class="sblockDat">Cα</td></tr></tr></tr>
-
<tr id='A4'><td class="sblockLbl"><b>[[A4|A4:]]</b></td><td class="sblockDat"></td></tr>
+
<tr id='A5'><td class="sblockLbl"><b>[[A5|A5:]]</b></td><td class="sblockDat"><scene name='78/782616/His144-a5/2'>Histidine 144</scene></td><td class="sblockDat">Amine</td></tr></tr></tr>
-
<tr id='A5'><td class="sblockLbl"><b>[[A5|A5:]]</b></td><td class="sblockDat"><scene name='78/782616/His144-a5/2'>His144-a5</scene></td></tr>
+
<tr id='A6'><td class="sblockLbl"><b>[[A6|A6:]]</b></td><td class="sblockDat"><scene name='78/782616/Gln88-a6/2'>Glutamine 88</scene></td><td class="sblockDat">Amine</td></tr></tr></tr>
-
<tr id='A6'><td class="sblockLbl"><b>[[A6|A6:]]</b></td><td class="sblockDat"><scene name='78/782616/Gln88-a6/2'>Gln88-a6</scene></td></tr>
+
<tr id='A6'><td class="sblockLbl"><b>[[A6|A6:]]</b></td><td class="sblockDat"><scene name='78/782616/Trp86-a6/2'>Tryptophan 86</scene></td><td class="sblockDat">Cα</td></tr></tr></tr>
-
<tr id='A6'><td class="sblockLbl"><b>[[A6|A6:]]</b></td><td class="sblockDat"><scene name='78/782616/Trp86-a6/2'>Trp86-a6</scene></td></tr>
+
<tr id='A7'><td class="sblockLbl"><b>[[A7|A7:]]</b></td><td class="sblockDat"><scene name='78/782616/Tyr54-ribose_a7/1'>Tryptophan 54</scene></td><td class="sblockDat">R-Group OH</td></tr></tr></tr>
-
<tr id='A7'><td class="sblockLbl"><b>[[A7|A7:]]</b></td><td class="sblockDat"><scene name='78/782616/Tyr54-ribose_a7/1'>Trp54-2'O of ribose attached to A7</scene></td></tr>
+
<tr id='A7'><td class="sblockLbl"><b>[[A7|A7:]]</b></td><td class="sblockDat"><scene name='78/782616/Asp45-a7/2'>Asparagine 54</scene></td><td class="sblockDat">R-Group Δ-Carbonyl</td></tr></tr></tr>
-
<tr id='A7'><td class="sblockLbl"><b>[[A7|A7:]]</b></td><td class="sblockDat"><scene name='78/782616/Asp45-a7/2'>asp45-a7</scene></td></tr>
+
<tr id='A7'><td class="sblockLbl"><b>[[A7|A7:]]</b></td><td class="sblockDat"><scene name='78/782616/Met46-a7/2'>Methionine 46</scene></td><td class="sblockDat">Amine</td></tr></tr></tr>
-
<tr id='A7'><td class="sblockLbl"><b>[[A7|A7:]]</b></td><td class="sblockDat"><scene name='78/782616/Met46-a7/2'>met46-a7</scene></td></tr>
+
<tr id='A8'><td class="sblockLbl"><b>[[A8|A8:]]</b></td><td class="sblockDat"><scene name='78/782616/Tyr54-a8/2'>Tyrosine 54</scene></td><td class="sblockDat">Tyrosine OH</td></tr></tr></tr>
-
<tr id='A8'><td class="sblockLbl"><b>[[A8|A8:]]</b></td><td class="sblockDat"><scene name='78/782616/Tyr54-a8_and_a8-a10_stacking/2'>Tyr54-A8 and A8-A10 aromatic stacking</scene></td></tr>
+
<tr id='A9'><td class="sblockLbl"><b>[[A9|A9:]]</b></td><td class="sblockDat"><scene name='78/782616/Arg44-a9/2'>Arginine 44</scene></td><td class="sblockDat">Amine</td></tr></tr></tr>
-
<tr id='A8'><td class="sblockLbl"><b>[[A8|A8:]]</b></td><td class="sblockDat"><scene name='78/782616/Tyr54-a8/2'>Tyr54-A8</scene></td></tr>
+
-
<tr id='A9'><td class="sblockLbl"><b>[[A9|A9:]]</b></td><td class="sblockDat"><scene name='78/782616/Arg44-a9/2'>arg44-a9</scene></td></tr>
+
</table>
</table>
Line 38: Line 36:
<scene name='78/782616/Lys174-a3/2'>Lysine 174</scene>
<scene name='78/782616/Lys174-a3/2'>Lysine 174</scene>
 +
<scene name='78/782616/Asn100-a4/2'>Asparagine 100</scene>
 +
<scene name='78/782616/Ser127-a4/1'>Serine 127</scene>

Revision as of 02:53, 2 April 2018

PABP (Poly A Binding Protein E. coli)

Caption for this structure

Drag the structure with the mouse to rotate

References

  1. ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644

Proteopedia Page Contributors and Editors (what is this?)

David Ryskamp

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