User:David Ryskamp/Sandbox1
From Proteopedia
(Difference between revisions)
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<table><tr><td colspan='2'> | <table><tr><td colspan='2'> | ||
| - | <tr id='Adenosine Number'><td class="sblockLbl"><b>Adenosine Number</b></td><td class="sblockDat">PABP residue</td><td class="sblockDat">Atom</td> | + | <tr id='Adenosine Number'><td class="sblockLbl"><b>Adenosine Number</b></td><td class="sblockDat">PABP residue</td><td class="sblockDat">Atom on Protein</td> |
<tr id='A2'><td class="sblockLbl"><b>A2</b></td><td class="sblockDat"><scene name='78/782616/Asn105_a2/2'>Asparagine 105</scene></td><td class="sblockDat">side chain amine</td> | <tr id='A2'><td class="sblockLbl"><b>A2</b></td><td class="sblockDat"><scene name='78/782616/Asn105_a2/2'>Asparagine 105</scene></td><td class="sblockDat">side chain amine</td> | ||
| - | <tr id='A3'><td class="sblockLbl"><b>A3</b></td><td class="sblockDat"><scene name='78/782616/Lys174-a3/2'>Lysine 174</scene></td><td class="sblockDat"> | + | <tr id='A3'><td class="sblockLbl"><b>A3</b></td><td class="sblockDat"><scene name='78/782616/Lys174-a3/2'>Lysine 174</scene></td><td class="sblockDat">amine</td></tr> |
<tr id='A4'><td class="sblockLbl"><b>A4</b></td><td class="sblockDat"><scene name='78/782616/Asn100-a4/2'>Asparagine 100</scene></td><td class="sblockDat">side chain amine and carbonyl</td></tr> | <tr id='A4'><td class="sblockLbl"><b>A4</b></td><td class="sblockDat"><scene name='78/782616/Asn100-a4/2'>Asparagine 100</scene></td><td class="sblockDat">side chain amine and carbonyl</td></tr> | ||
<tr id='A4'><td class="sblockLbl"><b>A4</b></td><td class="sblockDat"><scene name='78/782616/Ser127-a4/2'>Serine 127</scene></td><td class="sblockDat">side chain and N-term amine</td></tr> | <tr id='A4'><td class="sblockLbl"><b>A4</b></td><td class="sblockDat"><scene name='78/782616/Ser127-a4/2'>Serine 127</scene></td><td class="sblockDat">side chain and N-term amine</td></tr> | ||
| - | <tr id='A5'><td class="sblockLbl"><b>A5</b></td><td class="sblockDat"><scene name='78/782616/His144-a5/2'>Histidine 144</scene></td><td class="sblockDat">pyrimidine amine | + | <tr id='A5'><td class="sblockLbl"><b>A5</b></td><td class="sblockDat"><scene name='78/782616/His144-a5/2'>Histidine 144</scene></td><td class="sblockDat">pyrimidine π-amine </td></tr> |
| - | <tr id='A6'><td class="sblockLbl"><b>A6</b></td><td class="sblockDat"><scene name='78/782616/Gln88-a6/2'>Glutamine 88</scene></td><td class="sblockDat">N-term amine and C-term OH | + | <tr id='A6'><td class="sblockLbl"><b>A6</b></td><td class="sblockDat"><scene name='78/782616/Gln88-a6/2'>Glutamine 88</scene></td><td class="sblockDat">N-term amine and C-term OH</td></tr> |
<tr id='A6'><td class="sblockLbl"><b>A6</b></td><td class="sblockDat"><scene name='78/782616/Trp86-a6/2'>Tryptophan 86</scene></td><td class="sblockDat">N-term amine</td></tr> | <tr id='A6'><td class="sblockLbl"><b>A6</b></td><td class="sblockDat"><scene name='78/782616/Trp86-a6/2'>Tryptophan 86</scene></td><td class="sblockDat">N-term amine</td></tr> | ||
<tr id='A7'><td class="sblockLbl"><b>A7</b></td><td class="sblockDat"><scene name='78/782616/Tyr54-ribose_a7/1'>Tryptophan 54</scene></td><td class="sblockDat">side chain OH</td></tr> | <tr id='A7'><td class="sblockLbl"><b>A7</b></td><td class="sblockDat"><scene name='78/782616/Tyr54-ribose_a7/1'>Tryptophan 54</scene></td><td class="sblockDat">side chain OH</td></tr> | ||
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<tr id='A7'><td class="sblockLbl"><b>A7</b></td><td class="sblockDat"><scene name='78/782616/Met46-a7/2'>Methionine 46</scene></td><td class="sblockDat">C-term carbonyl</td></tr> | <tr id='A7'><td class="sblockLbl"><b>A7</b></td><td class="sblockDat"><scene name='78/782616/Met46-a7/2'>Methionine 46</scene></td><td class="sblockDat">C-term carbonyl</td></tr> | ||
<tr id='A8'><td class="sblockLbl"><b>A8</b></td><td class="sblockDat"><scene name='78/782616/Tyr54-a8/2'>Tyrosine 54</scene></td><td class="sblockDat">side chain OH</td></tr> | <tr id='A8'><td class="sblockLbl"><b>A8</b></td><td class="sblockDat"><scene name='78/782616/Tyr54-a8/2'>Tyrosine 54</scene></td><td class="sblockDat">side chain OH</td></tr> | ||
| - | <tr id='A9'><td class="sblockLbl"><b>A9</b></td><td class="sblockDat"><scene name='78/782616/Arg44-a9/2'>Arginine 44</scene></td><td class="sblockDat">side chain amine | + | <tr id='A9'><td class="sblockLbl"><b>A9</b></td><td class="sblockDat"><scene name='78/782616/Arg44-a9/2'>Arginine 44</scene></td><td class="sblockDat">side chain τ-amine</td></tr> |
</table> | </table> | ||
Revision as of 21:17, 2 April 2018
PABP (Poly A Binding Protein E. coli)
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References
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
- ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
