2gn4
From Proteopedia
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|PDB= 2gn4 |SIZE=350|CAPTION= <scene name='initialview01'>2gn4</scene>, resolution 1.900Å | |PDB= 2gn4 |SIZE=350|CAPTION= <scene name='initialview01'>2gn4</scene>, resolution 1.900Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand= | + | |LIGAND= <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene>, <scene name='pdbligand=UD1:URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE'>UD1</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= HP0840 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=210 Helicobacter pylori]) | |GENE= HP0840 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=210 Helicobacter pylori]) | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[2gn6|2GN6]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gn4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gn4 OCA], [http://www.ebi.ac.uk/pdbsum/2gn4 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2gn4 RCSB]</span> | ||
}} | }} | ||
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[[Category: Ishiyama, N.]] | [[Category: Ishiyama, N.]] | ||
[[Category: Lam, J S.]] | [[Category: Lam, J S.]] | ||
| - | [[Category: MES]] | ||
| - | [[Category: NDP]] | ||
| - | [[Category: UD1]] | ||
[[Category: dehydratase]] | [[Category: dehydratase]] | ||
[[Category: enzyme]] | [[Category: enzyme]] | ||
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[[Category: udp-glcnac]] | [[Category: udp-glcnac]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:18:55 2008'' |
Revision as of 00:18, 31 March 2008
| |||||||
| , resolution 1.900Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | , , | ||||||
| Gene: | HP0840 (Helicobacter pylori) | ||||||
| Related: | 2GN6
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystal structure of UDP-GlcNAc inverting 4,6-dehydratase in complex with NADPH and UDP-GlcNAc
Overview
FlaA1 from the human pathogen Helicobacter pylori is an enzyme involved in saccharide biosynthesis that has been shown to be essential for pathogenicity. Here we present five crystal structures of FlaA1 in the presence of substrate, inhibitors, and bound cofactor, with resolutions ranging from 2.8 to 1.9 A. These structures reveal that the enzyme is a novel member of the short-chain dehydrogenase/reductase superfamily. Additional electron microscopy studies show the enzyme to possess a hexameric doughnut-shaped quaternary structure. NMR analyses of "real time" enzyme-substrate reactions indicate that FlaA1 is a UDP-GlcNAc-inverting 4,6-dehydratase, suggesting that the enzyme catalyzes the first step in the biosynthetic pathway of a pseudaminic acid derivative, which is implicated in protein glycosylation. Guided by evidence from site-directed mutagenesis and computational simulations, a three-step reaction mechanism is proposed that involves Lys-133 functioning as both a catalytic acid and base.
About this Structure
2GN4 is a Single protein structure of sequence from Helicobacter pylori. Full crystallographic information is available from OCA.
Reference
Structural studies of FlaA1 from Helicobacter pylori reveal the mechanism for inverting 4,6-dehydratase activity., Ishiyama N, Creuzenet C, Miller WL, Demendi M, Anderson EM, Harauz G, Lam JS, Berghuis AM, J Biol Chem. 2006 Aug 25;281(34):24489-95. Epub 2006 May 1. PMID:16651261
Page seeded by OCA on Mon Mar 31 03:18:55 2008
Categories: Helicobacter pylori | Single protein | Berghuis, A M. | Creuzenet, C. | Ishiyama, N. | Lam, J S. | Dehydratase | Enzyme | Nadp | Nadph | Rossmann fold | Sdr | Tyk triad | Udp-glcnac
