DNA glycosylase
From Proteopedia
(Difference between revisions)
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**[[1lqj]] – EcUDG<BR /> | **[[1lqj]] – EcUDG<BR /> | ||
**[[1flz]] - EcUDG (mutant) <BR /> | **[[1flz]] - EcUDG (mutant) <BR /> | ||
| - | **[[1udh]], [[1udg]] – HsUDG - Herpes simplex virus<BR /> | + | **[[1udh]], [[1udg]], [[5nnh]], [[5nn7]] – HsUDG - Herpes simplex virus<BR /> |
**[[2c2p]], [[2boo]] – DrUDG – ''Deinococcus radiodurans''<BR /> | **[[2c2p]], [[2boo]] – DrUDG – ''Deinococcus radiodurans''<BR /> | ||
**[[2c2q]] – DrUDG (mutant) <BR /> | **[[2c2q]] – DrUDG (mutant) <BR /> | ||
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**[[3zor]] – BsUDG – ''Bacillus subtilis''<br /> | **[[3zor]] – BsUDG – ''Bacillus subtilis''<br /> | ||
**[[4zbx]], [[4zbz]] – StUDG – ''Sulfolobus tokodaii'' <br /> | **[[4zbx]], [[4zbz]] – StUDG – ''Sulfolobus tokodaii'' <br /> | ||
| + | **[[5x3g]] – NsUDG – ''Nitratifactor salsuginis''<br /> | ||
| + | **[[5x3h]] – NsUDG (mutant)<br /> | ||
*Uracil-DNA glycosylase complex with inhibitor protein | *Uracil-DNA glycosylase complex with inhibitor protein | ||
| Line 93: | Line 95: | ||
**[[4qcb]] – VvUDG (mutant) + DNA<br /> | **[[4qcb]] – VvUDG (mutant) + DNA<br /> | ||
**[[2ddg]], [[2dem]], [[2dp6]] – TtUDG + DNA + deoxyphosphono ribose<br /> | **[[2ddg]], [[2dem]], [[2dp6]] – TtUDG + DNA + deoxyphosphono ribose<br /> | ||
| + | **[[5nnu]] – HhUDG + DNA <br /> | ||
*Uracil-DNA glycosylase complex with uracil derivatives | *Uracil-DNA glycosylase complex with uracil derivatives | ||
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**[[3qi5]], [[1ewn]], [[1f4r]], [[1f6o]], [[1bnk]], [[3uby]] – hAlkDG + DNA<BR /> | **[[3qi5]], [[1ewn]], [[1f4r]], [[1f6o]], [[1bnk]], [[3uby]] – hAlkDG + DNA<BR /> | ||
**[[3jx7]], [[3jxy]], [[3jxz]], [[3jy1]] - BcAlkDG + DNA<BR /> | **[[3jx7]], [[3jxy]], [[3jxz]], [[3jy1]] - BcAlkDG + DNA<BR /> | ||
| + | **[[5uuh]], [[5uug]], [[5uuf]], [[5kub]] – BcAlkDG + damaged DNA <br /> | ||
**[[3ogd]], [[3oh6]], [[3oh9]] - EcAlkDG (mutant) + DNA<BR /> | **[[3ogd]], [[3oh6]], [[3oh9]] - EcAlkDG (mutant) + DNA<BR /> | ||
**[[3d4v]], [[3cvs]], [[3cvt]], [[3cw7]], [[3cwa]], [[3cws]], [[3cwt]], [[3cwu]], [[1diz]] - EcAlkDG + DNA<BR /> | **[[3d4v]], [[3cvs]], [[3cvt]], [[3cw7]], [[3cwa]], [[3cws]], [[3cwt]], [[3cwu]], [[1diz]] - EcAlkDG + DNA<BR /> | ||
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**[[4aia]] – SaAlkDG + methyladenine<br /> | **[[4aia]] – SaAlkDG + methyladenine<br /> | ||
**[[4ai5]] – SaAlkDG (mutant) + methyladenine<br /> | **[[4ai5]] – SaAlkDG (mutant) + methyladenine<br /> | ||
| + | |||
| + | *Alkylpurine DG | ||
| + | |||
| + | **[[5vi0]] – PfAlkCDG + DNA – ''Pseudomonas fluorescens''<br /> | ||
| + | **[[5vhv]] – PfAlkCDG + damaged DNA <br /> | ||
| + | |||
*Formamidopyrimidine DG | *Formamidopyrimidine DG | ||
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**[[1k82]] – EcFpg + DNA <br /> | **[[1k82]] – EcFpg + DNA <br /> | ||
| - | **[[ | + | **[[4pdi]], [[4pdg]], [[4pd2]], [[4pcz]] – LlFpg + damaged DNA – ''Lactococcus lactis''<br /> |
| + | **[[1kfv]], [[1nnj]] – LlFpg (mutant) + DNA <br /> | ||
**[[1l1t]], [[1l1z]], [[1l2b]], [[1l2c]] – GsFpg + DNA <br /> | **[[1l1t]], [[1l1z]], [[1l2b]], [[1l2c]] – GsFpg + DNA <br /> | ||
**[[2f5n]], [[2f5o]], [[2f5p]], [[3gpx]], [[3gq5]] – GsFpg (mutant) + DNA <br /> | **[[2f5n]], [[2f5o]], [[2f5p]], [[3gpx]], [[3gq5]] – GsFpg (mutant) + DNA <br /> | ||
Revision as of 09:40, 29 April 2018
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3D Structures of DNA glycosylate
Updated on 29-April-2018
References
- ↑ Fromme JC, Banerjee A, Verdine GL. DNA glycosylase recognition and catalysis. Curr Opin Struct Biol. 2004 Feb;14(1):43-9. PMID:15102448 doi:http://dx.doi.org/10.1016/j.sbi.2004.01.003
- ↑ Willetts KE, Rey F, Agostini I, Navarro JM, Baudat Y, Vigne R, Sire J. DNA repair enzyme uracil DNA glycosylase is specifically incorporated into human immunodeficiency virus type 1 viral particles through a Vpr-independent mechanism. J Virol. 1999 Feb;73(2):1682-8. PMID:9882380
- ↑ Fromme JC, Banerjee A, Huang SJ, Verdine GL. Structural basis for removal of adenine mispaired with 8-oxoguanine by MutY adenine DNA glycosylase. Nature. 2004 Feb 12;427(6975):652-6. PMID:14961129 doi:10.1038/nature02306
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