5u84
From Proteopedia
(Difference between revisions)
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<StructureSection load='5u84' size='340' side='right' caption='[[5u84]], [[Resolution|resolution]] 2.34Å' scene=''> | <StructureSection load='5u84' size='340' side='right' caption='[[5u84]], [[Resolution|resolution]] 2.34Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[5u84]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5U84 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5U84 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5u84]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Balac Balac]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5U84 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5U84 FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=I3C:5-AMINO-2,4,6-TRIIODOBENZENE-1,3-DICARBOXYLIC+ACID'>I3C</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=I3C:5-AMINO-2,4,6-TRIIODOBENZENE-1,3-DICARBOXYLIC+ACID'>I3C</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5u7z|5u7z]], [[5u81|5u81]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5u7z|5u7z]], [[5u81|5u81]]</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5u84 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5u84 OCA], [http://pdbe.org/5u84 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5u84 RCSB], [http://www.ebi.ac.uk/pdbsum/5u84 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5u84 ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5u84 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5u84 OCA], [http://pdbe.org/5u84 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5u84 RCSB], [http://www.ebi.ac.uk/pdbsum/5u84 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5u84 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Acid ceramidase (aCDase, ASAH1) hydrolyzes lysosomal membrane ceramide into sphingosine, the backbone of all sphingolipids, to regulate many cellular processes. Abnormal function of aCDase leads to Farber disease, spinal muscular atrophy with progressive myoclonic epilepsy, and is associated with Alzheimer's, diabetes, and cancer. Here, we present crystal structures of mammalian aCDases in both proenzyme and autocleaved forms. In the proenzyme, the catalytic center is buried and protected from solvent. Autocleavage triggers a conformational change exposing a hydrophobic channel leading to the active site. Substrate modeling suggests distinct catalytic mechanisms for substrate hydrolysis versus autocleavage. A hydrophobic surface surrounding the substrate binding channel appears to be a site of membrane attachment where the enzyme accepts substrates facilitated by the accessory protein, saposin-D. Structural mapping of disease mutations reveals that most would destabilize the protein fold. These results will inform the rational design of aCDase inhibitors and recombinant aCDase for disease therapeutics. | ||
+ | |||
+ | Structural basis for the activation of acid ceramidase.,Gebai A, Gorelik A, Li Z, Illes K, Nagar B Nat Commun. 2018 Apr 24;9(1):1621. doi: 10.1038/s41467-018-03844-2. PMID:29692406<ref>PMID:29692406</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 5u84" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Balac]] | ||
[[Category: Gebai, A]] | [[Category: Gebai, A]] | ||
[[Category: Gorelik, A]] | [[Category: Gorelik, A]] |
Revision as of 08:25, 2 May 2018
Acid ceramidase (ASAH1, aCDase) from common minke whale, Cys143Ala, uncleaved
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Categories: Balac | Gebai, A | Gorelik, A | Illes, K | Nagar, B | Ceramidase | Ceramide | Hydrolase | Ntn-hydrolase