This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2ctl
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| + | |||
==Solution structure of the 13th KH type I domain from human Vigilin== | ==Solution structure of the 13th KH type I domain from human Vigilin== | ||
<StructureSection load='2ctl' size='340' side='right' caption='[[2ctl]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | <StructureSection load='2ctl' size='340' side='right' caption='[[2ctl]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | ||
| Line 4: | Line 5: | ||
<table><tr><td colspan='2'>[[2ctl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CTL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CTL FirstGlance]. <br> | <table><tr><td colspan='2'>[[2ctl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CTL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CTL FirstGlance]. <br> | ||
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HDLBP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr> | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HDLBP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr> | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ctl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ctl OCA], [http://pdbe.org/2ctl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ctl RCSB], [http://www.ebi.ac.uk/pdbsum/2ctl PDBsum], [http://www.topsan.org/Proteins/RSGI/2ctl TOPSAN]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ctl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ctl OCA], [http://pdbe.org/2ctl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ctl RCSB], [http://www.ebi.ac.uk/pdbsum/2ctl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ctl ProSAT], [http://www.topsan.org/Proteins/RSGI/2ctl TOPSAN]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| Line 12: | Line 13: | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ct/2ctl_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ct/2ctl_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ctl ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
Revision as of 08:27, 23 May 2018
Solution structure of the 13th KH type I domain from human Vigilin
| |||||||||||
Categories: Human | Inoue, M | Kigawa, T | Koshiba, S | Structural genomic | Tomizawa, T | Yokoyama, S | Beta-alpha-alpha-beta-beta-alpha structure | Cell sterol metabolism | K homology type i domain | National project on protein structural and functional analyse | Nppsfa | Rna binding protein | Rna-binding | Rsgi | Transport protein
