This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2djm
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| + | |||
==Solution structure of N-terminal starch-binding domain of glucoamylase from Rhizopus oryzae== | ==Solution structure of N-terminal starch-binding domain of glucoamylase from Rhizopus oryzae== | ||
<StructureSection load='2djm' size='340' side='right' caption='[[2djm]], [[NMR_Ensembles_of_Models | 15 NMR models]]' scene=''> | <StructureSection load='2djm' size='340' side='right' caption='[[2djm]], [[NMR_Ensembles_of_Models | 15 NMR models]]' scene=''> | ||
| Line 4: | Line 5: | ||
<table><tr><td colspan='2'>[[2djm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_56536 Atcc 56536]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DJM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DJM FirstGlance]. <br> | <table><tr><td colspan='2'>[[2djm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_56536 Atcc 56536]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DJM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DJM FirstGlance]. <br> | ||
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">amyA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=64495 ATCC 56536])</td></tr> | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">amyA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=64495 ATCC 56536])</td></tr> | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2djm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2djm OCA], [http://pdbe.org/2djm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2djm RCSB], [http://www.ebi.ac.uk/pdbsum/2djm PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2djm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2djm OCA], [http://pdbe.org/2djm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2djm RCSB], [http://www.ebi.ac.uk/pdbsum/2djm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2djm ProSAT]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
| Line 10: | Line 11: | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dj/2djm_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dj/2djm_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2djm ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
Revision as of 06:08, 30 May 2018
Solution structure of N-terminal starch-binding domain of glucoamylase from Rhizopus oryzae
| |||||||||||
