This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2ddx
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| + | |||
==Crystal structure of beta-1,3-xylanase from Vibrio sp. AX-4== | ==Crystal structure of beta-1,3-xylanase from Vibrio sp. AX-4== | ||
<StructureSection load='2ddx' size='340' side='right' caption='[[2ddx]], [[Resolution|resolution]] 0.86Å' scene=''> | <StructureSection load='2ddx' size='340' side='right' caption='[[2ddx]], [[Resolution|resolution]] 0.86Å' scene=''> | ||
| Line 4: | Line 5: | ||
<table><tr><td colspan='2'>[[2ddx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_sp._ax-4 Vibrio sp. ax-4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DDX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DDX FirstGlance]. <br> | <table><tr><td colspan='2'>[[2ddx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_sp._ax-4 Vibrio sp. ax-4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DDX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DDX FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ddx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ddx OCA], [http://pdbe.org/2ddx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ddx RCSB], [http://www.ebi.ac.uk/pdbsum/2ddx PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ddx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ddx OCA], [http://pdbe.org/2ddx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ddx RCSB], [http://www.ebi.ac.uk/pdbsum/2ddx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ddx ProSAT]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
| Line 10: | Line 11: | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dd/2ddx_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dd/2ddx_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
Revision as of 06:41, 30 May 2018
Crystal structure of beta-1,3-xylanase from Vibrio sp. AX-4
| |||||||||||
