6fao

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m (Protected "6fao" [edit=sysop:move=sysop])
Current revision (06:01, 6 June 2018) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 6fao is ON HOLD until Paper Publication
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==Discovery and characterization of a thermostable GH6 endoglucanase from a compost metagenome==
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<StructureSection load='6fao' size='340' side='right' caption='[[6fao]], [[Resolution|resolution]] 1.88&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6fao]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FAO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6FAO FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6fao FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fao OCA], [http://pdbe.org/6fao PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6fao RCSB], [http://www.ebi.ac.uk/pdbsum/6fao PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6fao ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Enzymatic depolymerization of recalcitrant polysaccharides plays a key role in accessing the renewable energy stored within lignocellulosic biomass, and natural biodiversities may be explored to discover microbial enzymes that have evolved to conquer this task in various environments. Here, a metagenome from a thermophilic microbial community was mined to yield a novel, thermostable cellulase, named mgCel6A, with activity on an industrial cellulosic substrate (sulfite-pulped Norway spruce) and a glucomannanase side activity. The enzyme consists of a glycoside hydrolase family 6 catalytic domain (GH6) and a family 2 carbohydrate binding module (CBM2) that are connected by a linker rich in prolines and threonines. MgCel6A exhibited maximum activity at 85 degrees C and pH 5.0 on carboxymethyl cellulose (CMC), but in prolonged incubations with the industrial substrate, the highest yields were obtained at 60 degrees C, pH 6.0. Differential scanning calorimetry (DSC) indicated a Tm(app) of 76 degrees C. Both functional data and the crystal structure, solved at 1.88 A resolution, indicate that mgCel6A is an endoglucanase. Comparative studies with a truncated variant of the enzyme showed that the CBM increases substrate binding, while not affecting thermal stability. Importantly, at higher substrate concentrations the full-length enzyme was outperformed by the catalytic domain alone, underpinning previous suggestions that CBMs may be less useful in high-consistency bioprocessing.
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Authors: Jensen, M.S., Fredriksen, L., MacKenzie, A.K., Pope, P.B., Chylenski, P., Leiros, I., Williamson, A.K., Christopeit, T., Ostby, H., Vaaje-Kolstad, G., Eijsink, V.G.H.
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Discovery and characterization of a thermostable two-domain GH6 endoglucanase from a compost metagenome.,Jensen MS, Fredriksen L, MacKenzie AK, Pope PB, Leiros I, Chylenski P, Williamson AK, Christopeit T, Ostby H, Vaaje-Kolstad G, Eijsink VGH PLoS One. 2018 May 24;13(5):e0197862. doi: 10.1371/journal.pone.0197862., eCollection 2018. PMID:29795644<ref>PMID:29795644</ref>
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Description: Discovery and characterization of a thermostable GH6 endoglucanase from a compost metagenome
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Pope, P.B]]
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<div class="pdbe-citations 6fao" style="background-color:#fffaf0;"></div>
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[[Category: Eijsink, V.G.H]]
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== References ==
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[[Category: Leiros, I]]
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<references/>
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[[Category: Chylenski, P]]
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__TOC__
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[[Category: Williamson, A.K]]
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</StructureSection>
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[[Category: Vaaje-Kolstad, G]]
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[[Category: Cellulase]]
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[[Category: Mackenzie, A.K]]
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[[Category: Ostby, H]]
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[[Category: Christopeit, T]]
[[Category: Christopeit, T]]
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[[Category: Jensen, M.S]]
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[[Category: Chylenski, P]]
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[[Category: Eijsink, V G.H]]
[[Category: Fredriksen, L]]
[[Category: Fredriksen, L]]
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[[Category: Jensen, M S]]
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[[Category: Leiros, I]]
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[[Category: MacKenzie, A K]]
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[[Category: Ostby, H]]
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[[Category: Pope, P B]]
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[[Category: Vaaje-Kolstad, G]]
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[[Category: Williamson, A K]]
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[[Category: Carbohydrate binding module family 2]]
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[[Category: Endoglucanase]]
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[[Category: Glycoside hydrolase family 6]]
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[[Category: Hydrolase]]
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[[Category: Lignocellulose]]

Current revision

Discovery and characterization of a thermostable GH6 endoglucanase from a compost metagenome

6fao, resolution 1.88Å

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