This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2edz
From Proteopedia
| Line 1: | Line 1: | ||
| + | |||
==Solution structures of the PDZ domain of mus musculus PDZ domain-containing protein 1== | ==Solution structures of the PDZ domain of mus musculus PDZ domain-containing protein 1== | ||
<StructureSection load='2edz' size='340' side='right' caption='[[2edz]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | <StructureSection load='2edz' size='340' side='right' caption='[[2edz]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | ||
| Line 4: | Line 5: | ||
<table><tr><td colspan='2'>[[2edz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EDZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EDZ FirstGlance]. <br> | <table><tr><td colspan='2'>[[2edz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EDZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EDZ FirstGlance]. <br> | ||
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Pdzk1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr> | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Pdzk1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr> | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2edz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2edz OCA], [http://pdbe.org/2edz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2edz RCSB], [http://www.ebi.ac.uk/pdbsum/2edz PDBsum], [http://www.topsan.org/Proteins/RSGI/2edz TOPSAN]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2edz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2edz OCA], [http://pdbe.org/2edz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2edz RCSB], [http://www.ebi.ac.uk/pdbsum/2edz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2edz ProSAT], [http://www.topsan.org/Proteins/RSGI/2edz TOPSAN]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| Line 12: | Line 13: | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ed/2edz_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ed/2edz_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2edz ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
== References == | == References == | ||
Revision as of 06:39, 6 June 2018
Solution structures of the PDZ domain of mus musculus PDZ domain-containing protein 1
| |||||||||||
Categories: Lk3 transgenic mice | Harada, T | Kigawa, T | Koshiba, S | Structural genomic | Sato, M | Watanabe, S | Yokoyama, S | Cftr-associated protein of 70 kda | Na/pi cotransporter c-terminal-associated protein | Napi-cap1 | National project on protein structural and functional analyse | Nppsfa | Rsgi | Signaling protein | Sodium-hydrogen exchanger regulatory factor 3

