Glutaminase-Asparaginase (Pseudomonas 7A)
From Proteopedia
(Difference between revisions)
Line 14: | Line 14: | ||
In the amminoterminal portion of each monomer, is able to identify <scene name='79/790325/Beta_sheets_3pga/1'>10 beta-sheets</scene> and <scene name='79/790325/Alphahelix_3pga/1'>4 alpha-helix</scene>, unlike the carboxyl-terminal domain which have <scene name='79/790325/Beta_sheets_3pga/1'>4 beta sheets</scene> and <scene name='79/790325/Alphahelix_3pga/1'>4 alpha helix</scene>, you can also note that 5 beta-strands of the sheet are parallel and 4 are parallel. | In the amminoterminal portion of each monomer, is able to identify <scene name='79/790325/Beta_sheets_3pga/1'>10 beta-sheets</scene> and <scene name='79/790325/Alphahelix_3pga/1'>4 alpha-helix</scene>, unlike the carboxyl-terminal domain which have <scene name='79/790325/Beta_sheets_3pga/1'>4 beta sheets</scene> and <scene name='79/790325/Alphahelix_3pga/1'>4 alpha helix</scene>, you can also note that 5 beta-strands of the sheet are parallel and 4 are parallel. | ||
The PGA structure exhibit 4 active sites, they can be found in the intersection of monomers between the first and the third parallel beta sheets and loops from the carboxyl-terminal of the adjacent subunit, being the <scene name='79/790325/Flexible_loops_active_3pga/3'>residues 20-40</scene> the loop from carboxyl terminal and really important on catalysis due to their high flexibility; the main residues of this loop are Thr20, tyr34 and gly40. | The PGA structure exhibit 4 active sites, they can be found in the intersection of monomers between the first and the third parallel beta sheets and loops from the carboxyl-terminal of the adjacent subunit, being the <scene name='79/790325/Flexible_loops_active_3pga/3'>residues 20-40</scene> the loop from carboxyl terminal and really important on catalysis due to their high flexibility; the main residues of this loop are Thr20, tyr34 and gly40. | ||
- | In adition to flexible loop, there's a rigid group that takes part on catalysis and is represented by residues <scene name='79/790325/Active_site_residues_3pga/1'>Thr100, Asp101 and Lys173</scene> | + | In adition to flexible loop, there's a rigid group that takes part on catalysis and is represented by residues <scene name='79/790325/Active_site_residues_3pga/1'>Thr100, Asp101 and Lys173</scene>, which Thr100 plays as nucleophile, Lys173 is a base that enhance the nucleophilicity of Thr and Asp101 could stabilize the protonation state of Lys. |
+ | The flexible loop of active site plays a dual role, in the open conformation is responsible for substrate recognition, and in closed conformation is responsible for the proper spatial orientation of substrate in order to catalytic triad act the proper way. | ||
This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes. | This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes. | ||
Line 21: | Line 22: | ||
== References == | == References == | ||
<references/> | <references/> | ||
+ | Lubkowski, J., Wlodawer, A., Ammon, H. L., Copeland, T. D., & Swain, A. L. (1994). Structural characterization of Pseudomonas 7A glutaminase-asparaginase. Biochemistry, 33(34), 10257-10265. |
Revision as of 06:58, 18 June 2018
</StructureSection>' size='350' frame='true' align='right' caption='Insert caption here' scene='Insert optional scene name here' />==Glutaminase-Asparaginase (Pseudomonas 7A)==
|
References
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
- ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
Lubkowski, J., Wlodawer, A., Ammon, H. L., Copeland, T. D., & Swain, A. L. (1994). Structural characterization of Pseudomonas 7A glutaminase-asparaginase. Biochemistry, 33(34), 10257-10265.