5o9t

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m (Protected "5o9t" [edit=sysop:move=sysop])
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'''Unreleased structure'''
 
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The entry 5o9t is ON HOLD until Paper Publication
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==HsNMT1 in complex with CoA and acetylated-NCFSKPK peptide==
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<StructureSection load='5o9t' size='340' side='right' caption='[[5o9t]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5o9t]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5O9T OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5O9T FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MYA:TETRADECANOYL-COA'>MYA</scene></td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=1IP:N~2~-(PHOSPHONOACETYL)-L-ASPARAGINE'>1IP</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glycylpeptide_N-tetradecanoyltransferase Glycylpeptide N-tetradecanoyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.1.97 2.3.1.97] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5o9t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5o9t OCA], [http://pdbe.org/5o9t PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5o9t RCSB], [http://www.ebi.ac.uk/pdbsum/5o9t PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5o9t ProSAT]</span></td></tr>
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</table>
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== Function ==
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[[http://www.uniprot.org/uniprot/NMT1_HUMAN NMT1_HUMAN]] Adds a myristoyl group to the N-terminal glycine residue of certain cellular and viral proteins.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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An organism's entire protein modification repertoire has yet to be comprehensively mapped. N-myristoylation (MYR) is a crucial eukaryotic N-terminal protein modification. Here we mapped complete Homo sapiens and Arabidopsis thaliana myristoylomes. The crystal structures of human modifier NMT1 complexed with reactive and nonreactive target-mimicking peptide ligands revealed unexpected binding clefts and a modifier recognition pattern. This information allowed integrated mapping of myristoylomes using peptide macroarrays, dedicated prediction algorithms, and in vivo mass spectrometry. Global MYR profiling at the genomic scale identified over a thousand novel, heterogeneous targets in both organisms. Surprisingly, MYR involved a non-negligible set of overlapping targets with N-acetylation, and the sequence signature marks for a third proximal acylation-S-palmitoylation-were genomically imprinted, allowing recognition of sequences exhibiting both acylations. Together, the data extend the N-end rule concept for Gly-starting proteins to subcellular compartmentalization and reveal the main neighbors influencing protein modification profiles and consequent cell fate.
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Authors:
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Structural and genomic decoding of human and plant myristoylomes reveals a definitive recognition pattern.,Castrec B, Dian C, Ciccone S, Ebert CL, Bienvenut WV, Le Caer JP, Steyaert JM, Giglione C, Meinnel T Nat Chem Biol. 2018 Jun 11. pii: 10.1038/s41589-018-0077-5. doi:, 10.1038/s41589-018-0077-5. PMID:29892081<ref>PMID:29892081</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 5o9t" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Glycylpeptide N-tetradecanoyltransferase]]
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[[Category: Dian, C]]
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[[Category: Giglione, C]]
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[[Category: Meinnel, T]]
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[[Category: Acyltransferase]]
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[[Category: Coa]]
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[[Category: Glycylpeptide n-tetradecanoyltransferase 1 n-myristoyltransferase 1]]
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[[Category: Gnat]]
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[[Category: Myr-coa]]
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[[Category: Myr-peptide]]
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[[Category: Myristoyl]]
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[[Category: N-myristoyltransferase type1]]
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[[Category: Nmt]]
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[[Category: Nmt1]]
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[[Category: Transferase]]

Revision as of 05:25, 27 June 2018

HsNMT1 in complex with CoA and acetylated-NCFSKPK peptide

5o9t, resolution 2.15Å

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